Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05040 1432 / 0 HST1, HST HASTY 1, HASTY, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004145 [exp] 2223 / 0 AT3G05040 1460 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10033845 [exp] 1802 / 0 AT3G05040 1578 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10018994 [exp] 1796 / 0 AT3G05040 1579 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032100 [exp] 1672 / 0 AT3G05040 1513 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10001714 pacid=23142972 polypeptide=Lus10001714 locus=Lus10001714.g ID=Lus10001714.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCAAACAATGTAGCTAGAGCAATCGTTGCAGCTCTGGACTGGAACTCTTCTCCCGATGCTCGCAAAGCAGCTGTTTCTTACCTTGATTCTG TTAAAGCCGGAGATGTACGTGCACTAGCAAACACATCGCTGCTCCTTGTTAAGACAGATTGGTCTTCCGAGATCCGGTTGCATGCTTTCAAGATGTTGCA GCATTTAGTACGGTTGCGGTGGGAGGAACTCGGTTCAATGGAGCGGAGGAACTTTGCGAATGTAGCTGTTGAATTGATGTCTGAGACGACAAACGCTGCT GAAGAATGGCCATTGAAGAGTCAAAAATCTGCTCTAGTTGCTGAGATTGTTAGAAGAGAAGGCTCTGAACTGTGGCAAGAACTTCTGCCTTCTTTGGTTT CCTTATCCAACCAAGGTCCTGTGCAGGCCGAATTGGTTTCAATGACGTTGAGGTGGCTTCCTGAAGACATTACAGTTCACAATGAAGATTTGGAAGGTGA TCGCCGCCGCCAATTACTAAGGGGGCTTACGTTGTCTTTACCAGAAATTCTGCCATTGCTCTACACGCTGCTGGAAAGACACTTTGGAGCTGCATTGAAT GAAGTGAGTAGGCAGCAACTTGATGTCGCGAAACAGCATGCTGCAACTGTAACGGCTACGTTGAATGCTATCAATGCGTATGCTGAATGGGCTCCGGTGG TGGATCTAGCAAAATATGGCATAATTCATGGGTGTGGCATTTTGCTTTCAGCTGTCGATTTCCGTCTTCATGCTTGTGAATTCTTCAAACTTGTCTCTTC AAGGAAGAGACCGGGCAATGATTCTGCTTCAGAATTCGATTCTGCAGTAACTAGCATCTTTCAGATTTTGATGAATGTATCTAGAGAATTTTTGCAGAAG TCCGGTTCTCTAAATGAGAACGAAATAGAGTTTTCTGAATATATATGCGAAAGTATGGGTTGTTTGGGATCTACGAATTTGCACTGCATTACTGGAAACA GTTCTATACTATCTATATACTTACAACAGATGCTGGCCTTTTTCCAACACTATAAACTATGCCTGCATTACCAATCCCTTCTCTTTTGGCTGGCGTTAAC GAGGGATTTAGCATCAAAGCCAAAAGTTACAGCAGCTGATGGATCTGGTTCTGGTTCTGCTCAGCTTGACAATACCAAGCAAATGGTTTTGAATCACCTG AACGACGATATATGTGGTTCAATACTAGATATCTCTTTCCAGCGCATGCTTAGACGGGAGAAAGCATTTCCCGGGGCTTCGAACCTGGAGTTATGGAGTG ATGATTTCGGAGGTGACTTTGGCCAGTACCGATCAAAGCTGTCTGATCTGATGAAGCTTGTTGCAACTTTCAAGCCCATGATAGCTAGTAACAAAGTGTG TGACAGAATGTATTCTATCGCTAACAGCCCCTTGACTTCCCCAGTGCCTGTTCAGGATCTAGCTATGATGGAGAGTGTTCAAGCTTCCCTAGAGATCGTA GTAAGTGCGGTATTCGATGGATCAAACGAGTCAAGCTCCGAACTTCATCTTGCTGTATGCAGAATATTTGAAGGTTTGCTTCAGCGACTTATTGCTCTGA AATGGACAGAACCAGCTCTCGCCGAAATCCTAGGACACTGTTTGGATGCATTGGGTCCTTTTCTGAAGTACTTTCCTGATGCTGTTGGCGGGGTCATCAA CAAACTATTTGAACTTTTGTCCTCGCTTCCTTTTGCTGTGAAGGATCCCTCAACAAGTCGTGCACGACATGCAAGGTTACAGATTTGTGCGTCGTTCATA CGAATAGCAAAGGCTGCTGATAAAAGCATTTTGCCTCACATGAAGGGTATAGCAGATACCATGGGTTATATGCAAAATGAGGGTCGTTTGCTTCGCAGCG AGCACAATATTCTTGGCGAAGCGTTCATTGTCATGGCTTCCTCCGCTGGGCTTCAACAGCAACAGGAGGTTTTAAAGTGGTTACTCGAACCTTTGAGCCA GCAGTGGATACAGTTGGAATGGCAGAAAAACTACTTGTCCGAACCATCTGGCGTGGTTCGGTTATGCTTAGACAACACACAATTAATGTGGTCGGTTTTC CACACGGTTACGTTCCTCGAGAAGGCGCTTAAAAGGACTGGATACAGAAAGGGTGGCTCTACTACAGATCCTCCCATGCAGCATCCATTGAGTTCTCATC TAGCTTGGATGCTTCCCACTCTCTTAAAAATGCTCCGTGCTGTACATGCTCTTTGGTCGCCTTCTATATCTCAGACGTTACCAGCAGAGGTGAAAGCTGC CATGATGATAACTGATGCTGAGAAGTATAGCCTTCTTGGAGGAGCAAACCCGAAGATTCCAAAGGAGGTTGAGACAAATGAGGCTGATATAAGAAACTGG TTAAAAGGAATCAGGGACAGCGGTTACAACGTATTAGGTCTGGCTGCAACCGTTGGAGAACCGTTCTTCAAATGCTTGGATGTGGATGCATTTTCCTTGG CACTAATGGAGAACATACAATCAATGGACTTCCGACATTTAAAGCAGCTTATTCATTCAATTTTGATCGCTTTGGTGAAATCCTGCCCTCGGGAAGCGTG GGAGACTTGGCTCGAGAAGCTTTTGCAGCCGCTGTTTGTCCATTTGCAACGAGTTCTTTGCTTCTCTTGGTCAGGTCTGTTGCATGAAGGTAGAGCTAAG GTTCCAGACATACAAGGAATCGTTTCCGGACCGGACATGAAAGTCGAAGTTATGGAGGAGAAACTGCTCCGAGATTTAACTCGCGAAACGTGCACACTTC TTTCGGTTATCTCGTCGTCAGGGCTTAACACTGGGATCCCGAGCTTAGAACCGTTTGGCAATGCTACTAATCATGTTGATACAAGCTCTCTAACGGATTT GGATGCCTTCCTCCCCAAGTCTATGGTTGCGTTCGTTTTGCAGCGGAATAGCCTGGCAATTCCGGCTCTGCAGATTTGTTTAGAGGCCTTCAATTGGATG GATGGCGAATCGATGACTAAAGTTTCGTCCTTTTGTTCTGCTGTGGTTATTCTAGCGATCTCGACAAGAAATGTCGAGCTCCGGCAGTTTGTCTGCAAAG ATCTATTCTCGGCTGCAATCAAAGGCTTGGCACTCGAGTCGAATGCAATCATCAGTGCAGACTTGGTCGGTCTTTGTCGCGACATTTTTGTGTATCTTTG TGACAGAGATCCTGCTCCTAGACAGATTCTGCTGTCTCTTCCTTGCATTTCCCAACACGATTTGTCTGCATTCGAGGAAGCATTGACAAAGACATCTAGT CCAAAGGAACAAAAGCAGCATATGAAGAGCTTGCTTATGCTAGCTACTGGAAACAAGTTGAAGGCACTAATGGCTTCTACCCAGAAAAGTGTAAATGTCA TCACAGACGTTACAGCGAGGCCTCGCATTTTGAATTCTGCTGCTCGAGAAGCAAGAATCGAGGACGATGGGGAACTGGTTGGACTTGCAGCTATATTGTG A
AA sequence Show only first row Show all	>Lus10001714 pacid=23142972 polypeptide=Lus10001714 locus=Lus10001714.g ID=Lus10001714.BGIv1.0 annot-version=v1.0 MEEANNVARAIVAALDWNSSPDARKAAVSYLDSVKAGDVRALANTSLLLVKTDWSSEIRLHAFKMLQHLVRLRWEELGSMERRNFANVAVELMSETTNAA EEWPLKSQKSALVAEIVRREGSELWQELLPSLVSLSNQGPVQAELVSMTLRWLPEDITVHNEDLEGDRRRQLLRGLTLSLPEILPLLYTLLERHFGAALN EVSRQQLDVAKQHAATVTATLNAINAYAEWAPVVDLAKYGIIHGCGILLSAVDFRLHACEFFKLVSSRKRPGNDSASEFDSAVTSIFQILMNVSREFLQK SGSLNENEIEFSEYICESMGCLGSTNLHCITGNSSILSIYLQQMLAFFQHYKLCLHYQSLLFWLALTRDLASKPKVTAADGSGSGSAQLDNTKQMVLNHL NDDICGSILDISFQRMLRREKAFPGASNLELWSDDFGGDFGQYRSKLSDLMKLVATFKPMIASNKVCDRMYSIANSPLTSPVPVQDLAMMESVQASLEIV VSAVFDGSNESSSELHLAVCRIFEGLLQRLIALKWTEPALAEILGHCLDALGPFLKYFPDAVGGVINKLFELLSSLPFAVKDPSTSRARHARLQICASFI RIAKAADKSILPHMKGIADTMGYMQNEGRLLRSEHNILGEAFIVMASSAGLQQQQEVLKWLLEPLSQQWIQLEWQKNYLSEPSGVVRLCLDNTQLMWSVF HTVTFLEKALKRTGYRKGGSTTDPPMQHPLSSHLAWMLPTLLKMLRAVHALWSPSISQTLPAEVKAAMMITDAEKYSLLGGANPKIPKEVETNEADIRNW LKGIRDSGYNVLGLAATVGEPFFKCLDVDAFSLALMENIQSMDFRHLKQLIHSILIALVKSCPREAWETWLEKLLQPLFVHLQRVLCFSWSGLLHEGRAK VPDIQGIVSGPDMKVEVMEEKLLRDLTRETCTLLSVISSSGLNTGIPSLEPFGNATNHVDTSSLTDLDAFLPKSMVAFVLQRNSLAIPALQICLEAFNWM DGESMTKVSSFCSAVVILAISTRNVELRQFVCKDLFSAAIKGLALESNAIISADLVGLCRDIFVYLCDRDPAPRQILLSLPCISQHDLSAFEEALTKTSS PKEQKQHMKSLLMLATGNKLKALMASTQKSVNVITDVTARPRILNSAAREARIEDDGELVGLAAIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10001714 [exp]	0	1
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10027713 [exp]	6.5	0.8935
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	7.0	0.9221
AT4G27640			ARM repeat superfamily protein...		Lus10029067 [exp]	7.5	0.8851
AT5G19420			Regulator of chromosome conden...		Lus10024157 [exp]	9.2	0.9067
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	11.8	0.9135
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10003767 [exp]	11.8	0.8899
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	14.6	0.9110
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	16.2	0.8981
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10028113 [exp]	16.6	0.9084
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10026855 [exp]	18.0	0.8871

Compare expression of checked genes

Lus10001714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.