Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54610 754 / 0 Protein kinase superfamily protein (.1.2.3) AT3G05050 674 / 0 Protein kinase superfamily protein (.1) AT5G50860 618 / 0 Protein kinase superfamily protein (.1) AT1G53050 603 / 0 Protein kinase superfamily protein (.1) AT1G09600 544 / 0 Protein kinase superfamily protein (.1) AT1G74330 534 / 0 Protein kinase superfamily protein (.1.2) AT1G71530 519 / 0 Protein kinase superfamily protein (.1.2) AT1G03740 521 / 9e-179 Protein kinase superfamily protein (.1.2) AT1G18670 521 / 2e-178 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT5G44290 512 / 7e-176 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004144 [exp] 1054 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012805 [exp] 803 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 790 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 600 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 596 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10015727 [exp] 545 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10039836 [exp] 544 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 543 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10021642 [exp] 540 / 0 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045500 [exp] 862 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 848 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 800 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 674 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 673 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 612 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 610 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 590 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.012G067800 [exp] 557 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 550 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001715 pacid=23142986 polypeptide=Lus10001715 locus=Lus10001715.g ID=Lus10001715.BGIv1.0 annot-version=v1.0 ATGGGGTGTGTTTTTGGTAGAGAGGTTTCATCTGGTGTAGTGTCAGAATCCAAAGATGCTGCTGCTGCTGTTGTTAGTAGGAATCGGAACCTAAGTGCTC AATCCAGCAGGAACTTGGAAGAGGATGAGAATGTCTCGGTGACCAAGACCGAAACGAATCTGGAGACGAGTCGGAATGAGGAGAGCCAGAAAGAGGATAA TAATGAAGTTGGTGTTGTGGATAGTAAGAAGCCTAGAGGTGGTGATAGGAGGAGAAAGTCGAGGCCGAATCCTCGGTTGAGCAACCCTCCAAAGCATGTC CACGGCGAGCAGGTGGCTGCTGGCTGGCCGCCTTGGCTATCTGCTGTCTGTGGCGAGGCGCTCAATGGCTGGATTCCGCGGCGTGCTGACACTTTCGAGA AGATCGATAAGATTGGGTCAGGGACATATAGCAATGTGTACAAGGCAAGAGATCTGTTGACCGGGAAAGTCGTTGCACTAAAGAAGGTTCGTTTCGATAA CTTGGAGCCGGAGAGCGTGAAATTCATGGCTCGAGAGATTCTCATTCTTCGGAGGCTGGATCATACTAACGTGGTGAAATTGGAAGGTTTAGTTACTTCA AGGATGTCATGTAGTCTTTACCTGGTCTTTGAATACATGGAGCATGATCTAGCCGGACTCGCAGCAAGTCCGGATGTAACATTCACCGAAGCACAGGTTA AATGTTACATCCAGCAGCTATTATCTGGGCTCGAGCATTGTCACAAACGCGGGGTGCTTCACCGTGACATTAAGGGATCCAATCTTTTGATCGACAACGA AGGAGTGCTTCGGATTGCTGATTTTGGATTGGCAAGCTTTTTCGATCCTAACCGTAGACATCCAATGACGAGTAGAGTCGTCACGTTATGGTACCGGCCT CCTGAGCTCCTCCTTGGCGCTACAGAATATGGCGTCGGTGTAGACCTTTGGAGTGCCGGCTGTATATTAGCCGAGCTATTGGCCGGGAAACCTATTATGC CTGGTCGTACGGAGGTAGAGCAGCTGCACAAGATCTACAAGCTGTGCGGTTCGCCTTCGGACGACTACTGGAAGAAGTCGAAGTTGCCTAATGCAACCTT ATTTAAGCCTCGCGAGCCTTACAAAAGATGCATACGAGAGACGTTTAAAGATTTCCCACGGTCTTCTCTCCCTCTCATCGAGATGCTCCTCGCAATGGAT CCGGGAGAACGGCAGACAGCAACCGCTGCATTAAGAAGCGAATTCTTTACGACCGAACCTTATGCTTGTGATCCTTCCAGCCTCCCGAAGTATCCGCCAA GTAAAGAGATCGATGCCAAACGACGAGATGATGAAGCTCGAAGGCAACGAGCTGCTGCGAAAGCTCAAAATGAATCCACGAGGAAGCCACGAATTCGTGA CCGGACAGCTAGGGGAACGGCTACCCCGGAAGCCAATGCAGAGCTACAATCCAATATTGATAGGAGGCGCCTTGTGACTCACGCAAACGCGAAGAGCAAG AGCGAGAAGTTCCCCCCGCCACACCAGGACGGAGCTGTGGGTTATCCGTTGGGAGCGTCCCATCACATCGACCCTTCCGTTGTGCCATCCGATGTGCCTT TCAGCACCACATCATTCACCTACTCAAAAGAGCCGATCCAGACGTGGTCAGGGCCATTGGGAGGCGAACCGACCGGCGGGCACAGGCGAAAGAAGCATGG GGATGGACGAGAGTCTTCGAAGGTCGGAACGAGTCACCGTAAGAGACATTGA
AA sequence Show only first row Show all	>Lus10001715 pacid=23142986 polypeptide=Lus10001715 locus=Lus10001715.g ID=Lus10001715.BGIv1.0 annot-version=v1.0 MGCVFGREVSSGVVSESKDAAAAVVSRNRNLSAQSSRNLEEDENVSVTKTETNLETSRNEESQKEDNNEVGVVDSKKPRGGDRRRKSRPNPRLSNPPKHV HGEQVAAGWPPWLSAVCGEALNGWIPRRADTFEKIDKIGSGTYSNVYKARDLLTGKVVALKKVRFDNLEPESVKFMAREILILRRLDHTNVVKLEGLVTS RMSCSLYLVFEYMEHDLAGLAASPDVTFTEAQVKCYIQQLLSGLEHCHKRGVLHRDIKGSNLLIDNEGVLRIADFGLASFFDPNRRHPMTSRVVTLWYRP PELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSDDYWKKSKLPNATLFKPREPYKRCIRETFKDFPRSSLPLIEMLLAMD PGERQTATAALRSEFFTTEPYACDPSSLPKYPPSKEIDAKRRDDEARRQRAAAKAQNESTRKPRIRDRTARGTATPEANAELQSNIDRRRLVTHANAKSK SEKFPPPHQDGAVGYPLGASHHIDPSVVPSDVPFSTTSFTYSKEPIQTWSGPLGGEPTGGHRRKKHGDGRESSKVGTSHRKRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54610			Protein kinase superfamily pro...		Lus10001715 [exp]	0	1
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	4.9	0.9017
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	6.7	0.8932
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	8.6	0.8964
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10005754 [exp]	9.2	0.9001
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	9.7	0.8928
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	9.8	0.9145
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	11.0	0.8991
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	14.0	0.9171
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	14.0	0.9087
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	14.5	0.9221

Compare expression of checked genes

Lus10001715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.