Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27120 709 / 0 NOP56-like pre RNA processing ribonucleoprotein (.1) AT3G05060 704 / 0 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27140 474 / 3e-164 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G56110 345 / 1e-112 NOP56 homolog of nucleolar protein NOP56 (.1) AT3G12860 333 / 2e-108 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G60170 105 / 4e-24 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004143 [exp] 904 / 0 AT5G27120 730 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10033846 [exp] 833 / 0 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10018995 [exp] 828 / 0 AT5G27120 734 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10007265 [exp] 365 / 7e-123 AT3G05060 310 / 1e-101 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10017214 [exp] 330 / 5e-107 AT1G56110 783 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10021096 [exp] 330 / 8e-107 AT1G56110 782 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10029168 [exp] 114 / 8e-27 AT1G60170 707 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10012997 [exp] 113 / 2e-26 AT1G60170 705 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10040032 [exp] 102 / 1e-23 AT1G56110 231 / 1e-71 homolog of nucleolar protein NOP56 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032300 [exp] 772 / 0 AT3G05060 737 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.005G045600 [exp] 772 / 0 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.012G095400 [exp] 330 / 9e-107 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1) Potri.015G092900 [exp] 330 / 1e-106 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.014G102800 [exp] 117 / 7e-28 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.002G176000 [exp] 114 / 5e-27 AT1G60170 591 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08156 [flax] [poplar] NOP5NT NOP5NT (NUC127) domain PF01798 [flax] [poplar] Nop snoRNA binding domain, fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10001716 pacid=23142977 polypeptide=Lus10001716 locus=Lus10001716.g ID=Lus10001716.BGIv1.0 annot-version=v1.0 ATGAATGTGTTATTCGAATCTCCAGGAGGCGTTGCCCTTTTCAAAGTTTTGGATGAAGGGAAGCTATCCAAAGTCGAGGACTTATGGAAGGAATTTTCCA GCGGGGATGCAGCTCGAAAGGTGGTGAAGCTGAAAGCGTTCTACAAGTTTGAAAACACATCCACGGCGTTGGAGGAAGCTACTAAGATCATTGATGGCTC AACGACGAAAGGTCTACGCAAGTTCTTGAAAGCAAACTGTACCAACGAGCAGTTGGCCGTGGCTGACTCAAAACTCGGAAATGAAATCAAAGAAAAACTG AAAATCAACTGTGTGCACAACAATGCCGTCATGGAATTGATGAGAGGTGTGAGGAGTCAGTTGACTGAGCTGATTACCGGTCTCGAGAATCAAGATTTGC CCCGAATGAGCTTGGGTCTCGCTCATAGTTTGTCCAGATACAAACTTAAGTTCAGCCCCGATAAGGTTGATACGATGATTATTCAAGCAATTGGTTTACT TGACGATCTTGATAAGGAGCTTAACACCTATGCAATGAGAGTCAGGGAGTGGTACGGATGGCATTTTCCCGAGCTGGCCAAGATCGTACAAGACAACATT GCATATGCTAAAGTTGTAAAATTGATGGGGTTCCGTGAGAATGCTGCAAAATTCGATTTCTCGGAGGTATTAACTGAAGAAGTCGAGACAGAAGTGAAGG AAGCTGCAATGATATCTATGGGTACTGAAATCAGCGAGCACGACTTAACGAACATTCGCCAACTCTGCGACCAGGTCTTGTCTCTTTCTGATTACAGGGC GCAGCTTTACGATTACCTCAAGAGTAGGATGAACACTATTGCACCAAATTTGACTGCTCTCGTCGGCGAGCTTGTTGGCGCTCGACTAATCGCCCATGGT GGTAGCTTGATAAATCTAGCCAAGCAGCCCGGGAGCACGGTTCAGATTCTCGGTGCGGAGAAGGCCCTGTTCAGAGCTTTGAAGACTAAGCACGCTACAC CGAAATACGGGTTGATATACCATGCGTCCCTCGTCGGCCAAGCGCCGCCGAAGATGAAAGGGAAGATTTCTAGGTCGTTGGCTGCGAAAGCTTCTTTGGC GATTCGTTATGATGCACTTGGCGATGGCCAGGATAACTCGATGGGACTCGAGAATCGTGTTAAGCTCGAAGCTCGATTGAGGAGCCTTGAAGGCAAGGAA TTGGGACGATCGGCTGGCTCGGTTAAAGGAAAGCCTATGATTGAAGCTTATGACAAGGATAGGAAGAAGGGAGCTGGTGGACTCATAACTCCTGCAAAGA CTTACAATCCTTCTGCTGATGCTGTTCTTGGGCTAACTCCGAAATCGAACGAGGAGGAAACTGTGGAGAAGAAGAGGAAGACTGACGACGACGAGCCAGC TGAGGAGGCTCCAGCTACTGAAGAGAAGAAAGACAAAAAGAAGAAAAAGAGTAAAGATGTGGAAGAAGCTGAAGAAGAAGATGGTGCAGCCAAGAAGGAG AAGAAGAAGAAGAAAAAGAAGGAAGAAGAAGCTGTTGAAGATGGAGAGAAGAAGAAGAGGAAACGATCCGAACCAGAGGAGGAAGAATCAGAGACACCTA GCAAGAAGGATAAGAAGAAAAAGAAGAAGAGTTCGGATTGA
AA sequence Show only first row Show all	>Lus10001716 pacid=23142977 polypeptide=Lus10001716 locus=Lus10001716.g ID=Lus10001716.BGIv1.0 annot-version=v1.0 MNVLFESPGGVALFKVLDEGKLSKVEDLWKEFSSGDAARKVVKLKAFYKFENTSTALEEATKIIDGSTTKGLRKFLKANCTNEQLAVADSKLGNEIKEKL KINCVHNNAVMELMRGVRSQLTELITGLENQDLPRMSLGLAHSLSRYKLKFSPDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIVQDNI AYAKVVKLMGFRENAAKFDFSEVLTEEVETEVKEAAMISMGTEISEHDLTNIRQLCDQVLSLSDYRAQLYDYLKSRMNTIAPNLTALVGELVGARLIAHG GSLINLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAPPKMKGKISRSLAAKASLAIRYDALGDGQDNSMGLENRVKLEARLRSLEGKE LGRSAGSVKGKPMIEAYDKDRKKGAGGLITPAKTYNPSADAVLGLTPKSNEEETVEKKRKTDDDEPAEEAPATEEKKDKKKKKSKDVEEAEEEDGAAKKE KKKKKKKEEEAVEDGEKKKRKRSEPEEEESETPSKKDKKKKKKSSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27120			NOP56-like pre RNA processing ...		Lus10001716 [exp]	0	1
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10017214 [exp]	1.0	0.9621
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10010127 [exp]	2.8	0.8992
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10039081 [exp]	3.0	0.9057
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	3.2	0.9293
AT2G27710			60S acidic ribosomal protein f...		Lus10043377 [exp]	8.1	0.8797
AT4G28510		ATPHB1	prohibitin 1 (.1)		Lus10019161 [exp]	11.8	0.8767
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	16.9	0.8925
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	17.5	0.8758
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10008778 [exp]	20.0	0.8500
AT1G69400			Transducin/WD40 repeat-like su...		Lus10014343 [exp]	22.4	0.8774

Compare expression of checked genes

Lus10001716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.