Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05090 1042 / 0 LRS1 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G16650 76 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 75 / 1e-13 PRL1 pleiotropic regulatory locus 1 (.1) AT3G21540 75 / 1e-13 transducin family protein / WD-40 repeat family protein (.1) AT2G21390 74 / 3e-13 Coatomer, alpha subunit (.1) AT1G62020 73 / 6e-13 Coatomer, alpha subunit (.1) AT5G13480 72 / 8e-13 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 72 / 9e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 69 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 70 / 7e-12 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004142 [exp] 1511 / 0 AT3G05090 1091 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026094 [exp] 77 / 6e-15 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10039636 [exp] 76 / 2e-14 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 75 / 7e-14 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 75 / 9e-14 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10003487 [exp] 72 / 3e-13 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 73 / 7e-13 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 73 / 8e-13 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10007449 [exp] 72 / 9e-13 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G033800 [exp] 1208 / 0 AT3G05090 1147 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G046500 [exp] 1204 / 0 AT3G05090 1142 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G012800 [exp] 74 / 2e-13 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.009G058000 [exp] 74 / 2e-13 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.015G069700 [exp] 74 / 2e-13 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 74 / 3e-13 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.006G121100 [exp] 73 / 7e-13 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.010G255400 [exp] 71 / 3e-12 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 70 / 4e-12 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.003G197900 [exp] 70 / 4e-12 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF11816 [flax] [poplar] DUF3337 Domain of unknown function (DUF3337)
Representative CDS sequence Show only first row Show all	>Lus10001717 pacid=23142979 polypeptide=Lus10001717 locus=Lus10001717.g ID=Lus10001717.BGIv1.0 annot-version=v1.0 ATGCACCGTGTGGGTAGTGCAGGGAACACGAGCAATTCTGTTCGTCAGCGTAAAGAGAAGAGGCTTACGTATGTGTTAAATGACACAGATGATAGCAAGC ATTGTGCTGGTGTAAATTGTGTGACTCTGCTGAAGTCATCTGTATCTTCTGGGAGTGATTGCCTCTTCACTGGGAGTCGGGATGGTACATTGAAGAGGTG GGAAGTGTCTGAAGATTCTGCTACTTGCTCAGCTACATTTGAGTCGCACGTTGATTGGGTGAATGATGCTGTCCTTGCAGGTGAAAAAACCCTCGTCTCA TGCTCTTCTGACACTACTCTCAAGACTTGGGACTGCATGTCAGATGGAACTTGTACAAGAACTCTCCGACAGCACTCAGACTATGTTACACGTCTTGCTG CAGCAGATAGAAATAGCAATATTATTGCTTCATGTGGCCTTGGTGGAGAGGTTTTCATATGGGACATTGAAGCTGCTCTTGCCCCAGTCTCAAAGTCAAG TGATCCAATGGAAGACGAGTATTCAAATGGCATTAGTGGTTCTGGTAATTCGTTGCCTATGACAAGTTTGCGTCCAATCAGTTCAAGTAACAGTATTACG TCACACAACACTCAGTCCCATGGGTATACTCCAACTGCTGCAAAAGGCCACAAAGAGTCAGTATATGCATTGGCAACAAATGACACTGGGTCGGTTCTTG TATCAGGTGGAACTGAGAAGGTTGTCCGTGTTTGGGACCCAAGAAGTGGTTCAAAGACCATGAAATTAAGAGGCCATACAGATAACATCAGAGCTCTGCT TCTTGATTCTACTGGCAGGTATTGCTTATCGGGATCTTCTGACTCAATGATCAGACTATGGGACCTTGGTCAGCAGCGATGTGTACATTCATACGCGGTG CACACTGATTCTGTTTGGGCCCTGGCCAGTACCCCTACATTTAGTCATGTTTATAGTGGCGGGAGAGATCTTTCTTTGTACTTAACAGACTTGTCGACAA GGGAGAGTATGTTGCTTTGCACGAAAGAGCATCCCATCGTACAATTGGCATTGCATGATGACAGCATATGGGCTGCAACTACAGATTCTTCAGTTGATAG GTGGTCTGCAGATGGACAAAATCCCCAAAAGGTTTTCCAGAAAGGCGGTTCATTCTTGGCTGGGAACTTGTCCTTTTCTAGGGCAAGGGTTTCTCTTGAA GGATCAACACCAGTGCCTGTCCACAAAGAACCTACCTTAACTATTCCTGGAACTCCTGCAATAGTCCAGCATGAGATTCTAAACAACAAAAGACATGTAT TGACCAAGGACACTGCTGGTTCGGTGAAGCTATGGGAGATTACAAGAGGCGTAATACTTGAGGACTATGGGAAGGTTGCTGCAGGGCAGCATTTACTTAC TTTAAAGTATTGTGCTGCGCAGGTTCCGTTTGATGAAAAGAAAGAGCAGTTATTTGAGATGGTGAGCGTTCCTTCATGGTTCAACGTGGACAGTAGGCTT GGATGCTTGTCAGTTCATCTGGACTACCCACAATGCTTTTCCGCTGAGATGTACTCGCAAGACCTCAGCATTCCAGGGAAAGCTGAAGATGATAAGGTTA ATCTGGCCCGCGAAACCCTTAAAGGACTGTTCGGTCATTGGTTTGCCAAAAGAAAGCAAAGACATGGATCTCAAGCTTCTTCTAATGGCGAGGTCATTCC TACCAAGGATATCTCTTCTAGAAGCCTTGCTAATTCCAGAGTTGAGTTGGATGTCGAACATGACTCCATCGTCTACCATCCATTTGAGTTTTCAAAACGT TCTCCCCCTTCGATCATCACCGAGGGTCCTCAAGGAAGTCCATGGAGAAAGAAAATCACCGAATTGGACGGTACAGAAGATCAGAAGGATTTTCCTGCGT GGTGTTGGGACTACGTGCTGCATAATCGCACACTTCCAAAGGATAATAATAACAATAATAAGTGTAGCTTTTATCTGCAGCCCTGTGAAGGCAACTCAGT CCAGATCGTCACGCAAGGGAAACTTAGTGCTCCCAGGATATTGAGAATCCATAAAGTTGTCAATTATGTGCTAGAAAAGTTGCTCTTAGACAAACCGCTC GACAATCTCAATCCCGATGGACCGTTGTTCACTCCTGGACTCAGTGCAGGGCAGCTGCAACATTCAGCGCTTGGAGACGGATCTTTTCGGTCTGGGTCAA AGACTTGGGTGAAGTCCAGGAATACGATCGAGATATTATGCAATAATCAGGTCCTATCCCCAGAGATGAGTTTAGCCACTGTTCGAACTTATATATGGAA GAAACCCGAGGATCTGGTTCTCAACTATAGAATTATTCAGGGAAAGTGA
AA sequence Show only first row Show all	>Lus10001717 pacid=23142979 polypeptide=Lus10001717 locus=Lus10001717.g ID=Lus10001717.BGIv1.0 annot-version=v1.0 MHRVGSAGNTSNSVRQRKEKRLTYVLNDTDDSKHCAGVNCVTLLKSSVSSGSDCLFTGSRDGTLKRWEVSEDSATCSATFESHVDWVNDAVLAGEKTLVS CSSDTTLKTWDCMSDGTCTRTLRQHSDYVTRLAAADRNSNIIASCGLGGEVFIWDIEAALAPVSKSSDPMEDEYSNGISGSGNSLPMTSLRPISSSNSIT SHNTQSHGYTPTAAKGHKESVYALATNDTGSVLVSGGTEKVVRVWDPRSGSKTMKLRGHTDNIRALLLDSTGRYCLSGSSDSMIRLWDLGQQRCVHSYAV HTDSVWALASTPTFSHVYSGGRDLSLYLTDLSTRESMLLCTKEHPIVQLALHDDSIWAATTDSSVDRWSADGQNPQKVFQKGGSFLAGNLSFSRARVSLE GSTPVPVHKEPTLTIPGTPAIVQHEILNNKRHVLTKDTAGSVKLWEITRGVILEDYGKVAAGQHLLTLKYCAAQVPFDEKKEQLFEMVSVPSWFNVDSRL GCLSVHLDYPQCFSAEMYSQDLSIPGKAEDDKVNLARETLKGLFGHWFAKRKQRHGSQASSNGEVIPTKDISSRSLANSRVELDVEHDSIVYHPFEFSKR SPPSIITEGPQGSPWRKKITELDGTEDQKDFPAWCWDYVLHNRTLPKDNNNNNKCSFYLQPCEGNSVQIVTQGKLSAPRILRIHKVVNYVLEKLLLDKPL DNLNPDGPLFTPGLSAGQLQHSALGDGSFRSGSKTWVKSRNTIEILCNNQVLSPEMSLATVRTYIWKKPEDLVLNYRIIQGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	0	1
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	1.0	0.9509
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	1.4	0.9468
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	3.0	0.9375
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10015638 [exp]	3.3	0.9168
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	3.9	0.9329
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	4.0	0.9333
AT5G15680			ARM repeat superfamily protein...		Lus10035141 [exp]	4.8	0.8991
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	4.9	0.9268
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	4.9	0.9301
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	5.2	0.9259

Compare expression of checked genes

Lus10001717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.