Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05030 655 / 0 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G27150 618 / 0 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G06370 573 / 0 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT5G55470 487 / 7e-165 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT1G79610 135 / 2e-33 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 115 / 9e-27 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004141 [exp] 879 / 0 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10033840 [exp] 783 / 0 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 778 / 0 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 607 / 0 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10005934 [exp] 604 / 0 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10040903 [exp] 603 / 0 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 489 / 2e-165 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10014891 [exp] 353 / 2e-114 AT5G55470 528 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10039131 [exp] 124 / 1e-29 AT1G79610 677 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045100 [exp] 706 / 0 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 699 / 0 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G031500 [exp] 670 / 0 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.014G134900 [exp] 593 / 0 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 506 / 1e-171 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 118 / 9e-28 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10001718 pacid=23142984 polypeptide=Lus10001718 locus=Lus10001718.g ID=Lus10001718.BGIv1.0 annot-version=v1.0 ATGTCAACAAATCTAACGGTCCAGAACGCAACACCGTCAGATTTCCCTCCCCCACCATCGTCCGCACATTTCCCTTCATTTTCCCTCCTGAAGAAGAACA AACCAAAACAGATCTTTTTTCTGAAAAAAAGTCCGTCTTTTCTCTGCTATTTCGCCGGCGAAATCCGACCAGCCTACAATCTCGCCGGAAATCCTCCCTC CGGAAGCTTCTGCGACGGAGAATCTTCCCTCGTTACACTGTCGGGAGATTTCCGTGGCGGAGATCGTCGATTTGTCTTGTTTATAACTTCGTTTTTACTG GGCGAATGCAGGGGAAGGTGTGATTTTGAATTCGACAGTCTCTCTTCGTGGAATGGACGTGAGAAATCGAGGAAGAAAGATGGAAGTTTTAAGCTCAGTT ACGACGAGGCTGCAGGGGCTATCAACATCAGATCATGCTTCCGTGGTATCAATGAACTTGTTCGTCGCCCTTCTGTGTGCTTGTATCGTCATTGGACATC TTCTGGAGGAGAACCGGGTGTGTGCACTGGAGTTGTGATTTTGCTGATTAGTGGAGGGAAAAGCTCGCATCTACTGGTCTTCAGCGAGGATCTTTTCTTT ATATATCTTCTGCCGCCGATCATATTCAATGCTGGCTTCCAAGTGAAGAAGAAGCAGTTCTTCCGGAATTTCATCACGATTATGCTGTTCGGTGCTGTCG GTACATTGATATCTTGTTGCGTTATCTCGCTAGGTGCTATTCAGATCTTCAGTAGAATGGACATTGGTCTTGGCATTGGAGACTATATAGCACTCGGAGC AATATTTGCAGCGACAGATTCCGTATGCACTTTGCAGATTCTTAATCAGGACCAAACGCCTCTACTTTACAGTCTTGTATTCGGGGAAGGTGTCGTGAAT GATGCTACGTCAGTGGTACTCTTCAATGCACTCCAAGGCCTTGATGTTGTCAATCTGACTCCACATATCGGCTTGGAGTTCCTTGGCAACTTCTTCTATT TGTTTGTCACCAGTACCTTATTGGGTGCTGTGACTGGATTAGTCAGTGCTTACATCATCAAGACACTCTACTTTGGCAGGCATTCGACAGATAGGGAGGT TGCTCTCATGATGCTGATGGCATACCTTTCATATATGCTGGCTGAGCTATTCTATTTGAGTGGAATTCTCACAGTGTTCTTCTGTGGGATTGTGATGTCC CATTACACTTGGCACAATGTCACAGAGAGTTCGCGAGTTACAACGAAGCATGCATTTGCAACATTATCTTTTGTTTCTGAGATATTCATCTTCCTCTACG TCGGTATGGATGCCTTGGACATCGAGAAATGGAGCGTTGTGAGTGACAGTCCCGGAACATCACTTGCTGTGAGTTCAATACTATTAGCACTTGTTCTGGT TGGAAGAGCAGCTTTCGTTTTCCCCCTCTCGTTCTTATCGAACTTATCGAAGAAAAATCCTAACGATAAGATCAACATCAAGCAGCAAATCGTCATATGG TGGGCTGGCTTAATGAGAGGTGCTGTATCCATGGCGCTTGCATATAACAAGTTTACCAGCGGAGGACACACTCACTTACGAGGGAACGCGATACTGATCA CCAGCACCATAATCGTCGTTCTGTTCAGCACTGTGGTGTTCGGACTGATGACTCAACCACTCATAAGATTCCTCCTACCTACCGGCAAAGGCGGCCAGTC AGCAGAACCTTCCCTCACCAGCTCCCCAAAATCGATAGTGGTCCCACTCCTCGGCGAGGGCCAGGACTCGCTAGAGGACCTTGCCCACCAAGTCAACAGT GGGAACAGGCTTCGAGCCTTGCTGACCACGCCGACACACACTGTACATTACTACTGGCGAAAATTCGACAACGCATTCATGAGGCCGGTCTTTGGTGGCC GCGGGTTCGTCCCTTTCGTGCCTGGCTCGCCAACCGAGAGGAGTCTTCCTAGCATCAACACTCCATTTCAAAGGGTCATCGAGAAGAAGATCGAGCTGAC TGATCTGAAGTCGTCGGACCTCGACGAGTCGCTCGCGAGGCAGGTGGTGATGGTGAAGAACATGCTCGACGACTGTGCCAAGAACGACCCTGGTTTCTCC TCCGAGCTGATGGACCACGCAAAGGCGGTGATCATGGAGTACTTGAACAAACACAGGGATATCTTAGCGAAGAAGGGCGAAGAGGCGAAGGCGAGGATGG CGGTGAGGAAAATGGGGTACGAGCTGGTGAACAAGCTTCATCAGATCGACGAGATCCCGTCGGAGCTGAGGGCGACCAAATATGTGGAGGTGCAGGAGTT TGATGACGTGCTGATCCAGAACATCGGAGACGACTGA
AA sequence Show only first row Show all	>Lus10001718 pacid=23142984 polypeptide=Lus10001718 locus=Lus10001718.g ID=Lus10001718.BGIv1.0 annot-version=v1.0 MSTNLTVQNATPSDFPPPPSSAHFPSFSLLKKNKPKQIFFLKKSPSFLCYFAGEIRPAYNLAGNPPSGSFCDGESSLVTLSGDFRGGDRRFVLFITSFLL GECRGRCDFEFDSLSSWNGREKSRKKDGSFKLSYDEAAGAINIRSCFRGINELVRRPSVCLYRHWTSSGGEPGVCTGVVILLISGGKSSHLLVFSEDLFF IYLLPPIIFNAGFQVKKKQFFRNFITIMLFGAVGTLISCCVISLGAIQIFSRMDIGLGIGDYIALGAIFAATDSVCTLQILNQDQTPLLYSLVFGEGVVN DATSVVLFNALQGLDVVNLTPHIGLEFLGNFFYLFVTSTLLGAVTGLVSAYIIKTLYFGRHSTDREVALMMLMAYLSYMLAELFYLSGILTVFFCGIVMS HYTWHNVTESSRVTTKHAFATLSFVSEIFIFLYVGMDALDIEKWSVVSDSPGTSLAVSSILLALVLVGRAAFVFPLSFLSNLSKKNPNDKINIKQQIVIW WAGLMRGAVSMALAYNKFTSGGHTHLRGNAILITSTIIVVLFSTVVFGLMTQPLIRFLLPTGKGGQSAEPSLTSSPKSIVVPLLGEGQDSLEDLAHQVNS GNRLRALLTTPTHTVHYYWRKFDNAFMRPVFGGRGFVPFVPGSPTERSLPSINTPFQRVIEKKIELTDLKSSDLDESLARQVVMVKNMLDDCAKNDPGFS SELMDHAKAVIMEYLNKHRDILAKKGEEAKARMAVRKMGYELVNKLHQIDEIPSELRATKYVEVQEFDDVLIQNIGDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10001718 [exp]	0	1
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	3.5	0.8730
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	6.5	0.8371
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	6.9	0.8153
AT1G13900			Purple acid phosphatases super...		Lus10036895 [exp]	7.4	0.8245
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	7.7	0.8475
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	8.6	0.8483
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	9.7	0.8399
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10029616 [exp]	10.4	0.8374
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	14.6	0.8450
AT3G52240			unknown protein		Lus10043425 [exp]	14.8	0.7812

Compare expression of checked genes

Lus10001718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.