Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08830 251 / 3e-85 CSD1 copper/zinc superoxide dismutase 1 (.1.2) AT5G18100 193 / 3e-62 CSD3 copper/zinc superoxide dismutase 3 (.1.2) AT2G28190 194 / 5e-62 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1) AT1G12520 58 / 9e-10 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004139 [exp] 284 / 3e-98 AT1G08830 253 / 4e-88 copper/zinc superoxide dismutase 1 (.1.2) Lus10016155 [exp] 197 / 3e-63 AT2G28190 308 / 1e-107 copper/zinc superoxide dismutase 2 (.1) Lus10010651 [exp] 200 / 2e-62 AT5G18100 228 / 9e-75 copper/zinc superoxide dismutase 3 (.1.2) Lus10021410 [exp] 189 / 4e-60 AT2G28190 306 / 5e-107 copper/zinc superoxide dismutase 2 (.1) Lus10013615 [exp] 177 / 3e-54 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2) Lus10006686 [exp] 65 / 6e-12 AT1G12520 393 / 6e-138 copper chaperone for SOD1 (.1.2.3) Lus10007031 [exp] 64 / 1e-11 AT1G12520 399 / 5e-140 copper chaperone for SOD1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044400 [exp] 275 / 8e-95 AT1G08830 266 / 5e-93 copper/zinc superoxide dismutase 1 (.1.2) Potri.013G031100 [exp] 259 / 1e-88 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2) Potri.013G056900 [exp] 205 / 3e-67 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2) Potri.019G035800 [exp] 203 / 2e-66 AT5G18100 237 / 3e-81 copper/zinc superoxide dismutase 3 (.1.2) Potri.004G216700 [exp] 198 / 2e-63 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1) Potri.009G005100 [exp] 190 / 2e-60 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1) Potri.003G118400 [exp] 59 / 6e-10 AT1G12520 393 / 8e-138 copper chaperone for SOD1 (.1.2.3) Potri.001G113800 [exp] 57 / 2e-09 AT1G12520 377 / 2e-131 copper chaperone for SOD1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00080 [flax] [poplar] Sod_Cu Copper/zinc superoxide dismutase (SODC)
Representative CDS sequence Show only first row Show all	>Lus10001719 pacid=23142970 polypeptide=Lus10001719 locus=Lus10001719.g ID=Lus10001719.BGIv1.0 annot-version=v1.0 ATGGTGAAGGCAGTTGCTGTCCTTGGAAACAGTGATGGCGTCAGCGGCACCATCTTCTTCACTCAGGAAGGCGACGGCCCAACCACTGTAACTGGAAACA TCTCTGGCCTTAAGCCTGGACTCCATGGCTTCCATGTCCACGCCCTTGGTGACACCACTAACGGCTGCATGTCCACTGGACCCCACTTCAACCCTCAGGG AAAGGAGCACGGTGCTCCAGAGGATGAACACCGCCATGCCGGTGACCTCGGAAACGTTACCGTCGGAGATGACGGTACTGCAACTTTCACCATCATTGAC AAGCAGATTCCTCTTACTGGTGCGCACTCCATCATCGGCAGGGCTGTTGTTGTTCATGCTGATCCTGATGACCTTGGAAAGGGTGGACACGAGCTGAGCA AAAGCACTGGAAATGCAGGAGGAAGAGTTGCCTGCGTTAATCAACAAATTATCACATGTAGGTTGGTTTCAATCATCGTCGCCGTGAACCCTATTGCCCA CCGTCACATCATCGCTACCATCGAATCATCATCTGCTGCCCAACACCTCGACACAGTAGCACCAACCCAACCCCTCCGGAGCTCAAACGGAAGCCTGCAA CTTCATCCACCACCGATCGGCGGACCTGTGGCATCAACGATCGCTGTGGATAACATGATGCGTAGACCTGCTATGGTCAGGACCATGGCTGATCCACCGC CGCAATCGCTAGGAAGGAGGACTCCGATGTTACAACAACAATTCAGGTGGGTCACGCAAGTGTGA
AA sequence Show only first row Show all	>Lus10001719 pacid=23142970 polypeptide=Lus10001719 locus=Lus10001719.g ID=Lus10001719.BGIv1.0 annot-version=v1.0 MVKAVAVLGNSDGVSGTIFFTQEGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPQGKEHGAPEDEHRHAGDLGNVTVGDDGTATFTIID KQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACVNQQIITCRLVSIIVAVNPIAHRHIIATIESSSAAQHLDTVAPTQPLRSSNGSLQ LHPPPIGGPVASTIAVDNMMRRPAMVRTMADPPPQSLGRRTPMLQQQFRWVTQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	0	1
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	1.7	0.8753
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	3.5	0.8512
AT3G62580			Late embryogenesis abundant pr...		Lus10010016 [exp]	4.9	0.8463
AT3G24100			Uncharacterised protein family...		Lus10016668 [exp]	5.1	0.8378
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	5.7	0.8505
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	7.1	0.8548
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	7.1	0.8496
AT1G26900			Pentatricopeptide repeat (PPR)...		Lus10036736 [exp]	8.7	0.7702
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10007654 [exp]	8.8	0.8488
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	10.0	0.8409

Compare expression of checked genes

Lus10001719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.