Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08630 322 / 6e-98 unknown protein AT4G25070 266 / 4e-78 unknown protein AT3G48860 259 / 4e-77 unknown protein AT5G13260 246 / 1e-72 unknown protein AT5G23700 236 / 9e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004138 [exp] 1065 / 0 AT4G08630 464 / 2e-152 unknown protein Lus10032546 [exp] 284 / 3e-87 AT3G48860 595 / 0.0 unknown protein Lus10043194 [exp] 276 / 1e-83 AT3G48860 684 / 0.0 unknown protein Lus10036015 [exp] 275 / 5e-83 AT3G48860 675 / 0.0 unknown protein Lus10016721 [exp] 271 / 1e-81 AT3G48860 674 / 0.0 unknown protein Lus10001801 [exp] 251 / 3e-74 AT5G13260 591 / 0.0 unknown protein Lus10002574 [exp] 238 / 5e-69 AT5G13260 566 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044600 [exp] 417 / 1e-135 AT4G08630 436 / 5e-142 unknown protein Potri.012G105400 [exp] 278 / 3e-84 AT3G48860 546 / 0.0 unknown protein Potri.001G065800 [exp] 278 / 3e-84 AT3G48860 528 / 0.0 unknown protein Potri.003G164100 [exp] 270 / 3e-81 AT5G13260 529 / 0.0 unknown protein Potri.015G104600 [exp] 239 / 2e-69 AT3G48860 452 / 3e-153 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001720 pacid=23142978 polypeptide=Lus10001720 locus=Lus10001720.g ID=Lus10001720.BGIv1.0 annot-version=v1.0 ATGGATAGCCGGTACCGGAGGCAGAGGAACAACAGCATGGCGGTAGCGCCGTCTTCGCCAACCGCGTCATCGTCGTCGTCTACGATGCATGTCCGGACGG GATCTAGCGGCGCCGTAGTCAAGAAGGCGCAGACGAAGGCCGCGGCGCAGAGGCTAGCTCAGGTGATGTCGAACCAGCGTCCGGACGACGATAGCGGCGA AGACGACGACGAGCCAATCTTCGCCGGCGGAGGCCTTGGTCTAGCTGGTGGAAGGAAAGTCCAGCCTCGGTCACCGATGACAAGACGTGTAGTTCAGAGC CGTGTACAGATGAGGCCATCCTCGACGGCGTATGAGGAGAGCAGTGACAATGAAGATGATCTTGCTCCAGTGTCTGTCTCGATTGGGCGAGGGGTTGGAA GGTCAATGCGATCAAATTCTCCAATGGGCCGACCTGGGACTCAAAGTCGTGTGCCAGGGAAGCCACCCCAGCCGGTTGATGAGGACAGTGACATGGACGA TAACTCATCCATAAGTGGTCGTGTCTCTATCGGTCATGCAGGTGGAAGATCAATACGACCTCAATCCCCCATGATGAAACCAGGAGCTCATATTCGTGCC CAAGTGAAGACAACAACCCAACCTCTAAGTGATAGGGATAGTGATAAAGATGATGACCATAGCCCGGTCAGTGTTTCAGTATCGATTGGGCATGGCGGGG GCCGGTCAATGCAAGCACGCCCTTCAATGGGTAGGCCTGTTGCTCAGAATCGTGCACCCATGAAGACAGCTGCACTAGCTGACGAGGACAGCGATAGGGA CGATAGCTACAGCCCTGTAAGCGACAGGGTATCGATCGGCCAAGCTGGTGGAAGGTCAATTCGAGGGCATTCTCCAATGGCAGTTCGTAACAGGCAAGAC CAGTTGAGCTCTATAAGGATTGGTCGGCCATCTGTACCCTCCAACTCTGGGGAGCAACAGCTATCATTACTTCAATCAACTTCATCCGCACCAGCATTTC AGATCATCAGTTCCATGGAACAGCCCCACTCTGCTAGGTCTACATGTGAAGATCCTTCATCAGCTCGTTCTACAGCTGGCCGTTCAGGTCCTCCAGGAAT CCGGACAATTCCTTCTAGTGTGAACATCTCACTAAGGCCAGTTTCTTCTTTCATGTCCTCTGATCCCACTCCAGAAAATTGGAAAGAACAAAGATTGAGT GAACCAAACAGCAATCGGCCTGCATCTGCATTACAAGATGAGATCGACATGCTACAAGAGGAAAATGATGGCTTACTTGAGAAGCTTCGACTTGCAGAAG AGAGGCAGGAAGAAGCTGAGGCTAGAGTTCGCCAACTTGAGCAACAGGTTGCTAATCTTGGAGAAGGTGCTGCTTTGAGGATGGCAGAAGTAACTAACAA AGCTGAAGAGATCAATTCCCTTAAGATAGAAGCTGAGAGTGCTAAGGAGGAAGCAGCAGCTGCATACGAGCAGATGGAAGAAGCTGCCTTGGAGGCCAAG TCACTTCGTAACATGACTCAAAGAATGGTGTTGACAGAGGAGGAAATGGAAGAGGTTGTTCTCAAGAGGTGCTGGCTTGCTCGGTATTGGAGCTTATGTC TTCAACACGGCATTCATGCGGAGATAGCCAAAGCAAGATACGGGTACTGGTCATCATTCGCTCCACTTCCTGATGATGTGGTCTTAGCTGCAGGGCAGAG AGCTCAATCTGACGAAGCACTCATAGGCAATGACGCTGAGGAAAGGCAGAAAGTTCTGCAAGGTACCCAACAACTCTCCGGAGAAGGCAACATTGAGAGC ATGGTCTTGGTCGAAAGAGGCCTCCGGGAAATGGCTTCGTTGAAGGTAGAGGATGCTTTAGCACTTGTCATGGCCCAGAAACGGCGCCCAACTTCAACCA AAGCTGAGGACGTTAAACTACCTAGTGAAGGACAGTACGAAGCATTTGAATTGAGCCAGGAGGAATCGAATGATGTGCTTTTCAGACAGGCTTGGCTGAC CTACTTCTGGAGAAGAGCCAAGGACCACGGGACGGAATCGGACCTAGCCGAGGAGCGATTAGGTTTCTGGCTCAACCGTAGCGGTCGATCCTTTTCGTCG CAGGATGCTGTCGATGTGGAGCGCGGGCTTCAGGAATTGAGGAAACTAGGACTTGAGGATCAGCTGTGGCACGGGTCACGCAATGAGCTCGATTACGGGC CCAGCTCCAAGGCCCGTTTGGCCAACGACTTGATTCTCCTCTCCCTCATAATTCCAAAATAA
AA sequence Show only first row Show all	>Lus10001720 pacid=23142978 polypeptide=Lus10001720 locus=Lus10001720.g ID=Lus10001720.BGIv1.0 annot-version=v1.0 MDSRYRRQRNNSMAVAPSSPTASSSSSTMHVRTGSSGAVVKKAQTKAAAQRLAQVMSNQRPDDDSGEDDDEPIFAGGGLGLAGGRKVQPRSPMTRRVVQS RVQMRPSSTAYEESSDNEDDLAPVSVSIGRGVGRSMRSNSPMGRPGTQSRVPGKPPQPVDEDSDMDDNSSISGRVSIGHAGGRSIRPQSPMMKPGAHIRA QVKTTTQPLSDRDSDKDDDHSPVSVSVSIGHGGGRSMQARPSMGRPVAQNRAPMKTAALADEDSDRDDSYSPVSDRVSIGQAGGRSIRGHSPMAVRNRQD QLSSIRIGRPSVPSNSGEQQLSLLQSTSSAPAFQIISSMEQPHSARSTCEDPSSARSTAGRSGPPGIRTIPSSVNISLRPVSSFMSSDPTPENWKEQRLS EPNSNRPASALQDEIDMLQEENDGLLEKLRLAEERQEEAEARVRQLEQQVANLGEGAALRMAEVTNKAEEINSLKIEAESAKEEAAAAYEQMEEAALEAK SLRNMTQRMVLTEEEMEEVVLKRCWLARYWSLCLQHGIHAEIAKARYGYWSSFAPLPDDVVLAAGQRAQSDEALIGNDAEERQKVLQGTQQLSGEGNIES MVLVERGLREMASLKVEDALALVMAQKRRPTSTKAEDVKLPSEGQYEAFELSQEESNDVLFRQAWLTYFWRRAKDHGTESDLAEERLGFWLNRSGRSFSS QDAVDVERGLQELRKLGLEDQLWHGSRNELDYGPSSKARLANDLILLSLIIPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08630			unknown protein		Lus10001720 [exp]	0	1
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	3.2	0.8549
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10005209 [exp]	4.0	0.8360
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10016200 [exp]	4.5	0.8282
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	9.3	0.8649
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10005783 [exp]	13.1	0.8503
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10031683 [exp]	16.3	0.7192
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	17.8	0.8498
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Lus10029894 [exp]	18.2	0.8272
					Lus10038266 [exp]	18.5	0.8377
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027453 [exp]	31.0	0.7317

Compare expression of checked genes

Lus10001720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.