Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05000 241 / 1e-80 Transport protein particle (TRAPP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004135 [exp] 295 / 7e-102 AT3G05000 292 / 1e-102 Transport protein particle (TRAPP) component (.1) Lus10018981 [exp] 250 / 3e-84 AT3G05000 285 / 5e-100 Transport protein particle (TRAPP) component (.1) Lus10033832 [exp] 249 / 1e-83 AT3G05000 285 / 1e-99 Transport protein particle (TRAPP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031000 [exp] 245 / 2e-82 AT3G05000 312 / 1e-110 Transport protein particle (TRAPP) component (.1) Potri.005G044300 [exp] 229 / 4e-76 AT3G05000 286 / 3e-100 Transport protein particle (TRAPP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [flax] [poplar] HNOX-like PF04051 [flax] [poplar] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Lus10001721 pacid=23142983 polypeptide=Lus10001721 locus=Lus10001721.g ID=Lus10001721.BGIv1.0 annot-version=v1.0 ATGGGGAGAGAAGTGTCGGAGAGCTGCGTGGACAGTTTACTCACCGAAATGGTGTCGTTGTACTGCAGTCGGTTATACGCTAACAAGCCCGAGCTCGCCG CCCGCCGGATCGAGGGATCGAGGCCATCGGGTACCAAGTCGGCCACCAGCTCTCCGAGCGGCATTATTTGTGTTTTGATGAGTTCGCGACTTTTGAATCT GGTTTGGTTGGCTAGAAAGTTGAGGACACTGGAAAGTGAGAAACTATGGTTTGACGATCTTGCGCTGTTGTACACGATGGAGAGACCTCGGTTTAATGAT CATCTAGAGGCGATAAAGTTCATCTGCAAGGATTTTTGGTCCGAGCTTTTCAAGAAGCAGATCGATAACCTGAAGACAAACCATAGAGGAACCTTCGTGT TGCAAGACAATCGGTTTCGTTGGCTTGGAAGGATGTCACTAGATTCGACAAGTGAGAACGGTCTTCCTCTGGACCCTGCTGCATTGGCTGAAGATAAGAC AGCTCAAGCAATGAGCATGTATCTATATTTCCCCTGTGGAATCATCAGAGGAGCTCTTTCAAACCTCGGGATCTCTTGTGCCGTTTCGGCCGATATTTCT GCGCTACCAGCTTCAGAATCACTTGCTAGGCTTATCACTCATGGCTGTTATGATGAGGCTGTAGATGTAGATGTTGACAAGGCTCACTTGCTAGGCTTAT CACTTATGGTCGAAACAGAATTGATTGCTTTTGTACATGTAGCTGATAACTTTATTCTAATGGCTATTACTAGTTGGACTTCTCTCTTGATCCCCCAGAC TCCACCGTCTTCTTCATTGCCGGCGGCTTTCATGAATTGA
AA sequence Show only first row Show all	>Lus10001721 pacid=23142983 polypeptide=Lus10001721 locus=Lus10001721.g ID=Lus10001721.BGIv1.0 annot-version=v1.0 MGREVSESCVDSLLTEMVSLYCSRLYANKPELAARRIEGSRPSGTKSATSSPSGIICVLMSSRLLNLVWLARKLRTLESEKLWFDDLALLYTMERPRFND HLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLGRMSLDSTSENGLPLDPAALAEDKTAQAMSMYLYFPCGIIRGALSNLGISCAVSADIS ALPASESLARLITHGCYDEAVDVDVDKAHLLGLSLMVETELIAFVHVADNFILMAITSWTSLLIPQTPPSSSLPAAFMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05000			Transport protein particle (TR...		Lus10001721 [exp]	0	1
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10016376 [exp]	24.4	0.6209
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10036483 [exp]	47.0	0.6205
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	52.2	0.6511
AT3G57930			unknown protein		Lus10031233 [exp]	62.3	0.6149
AT1G29330		ATERD2, AERD2, ...	ARABIDOPSIS THALIANA ENDOPLASM...		Lus10007314 [exp]	119.3	0.5966

Compare expression of checked genes

Lus10001721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.