Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033828 [exp] 70 / 1e-14 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10009979 [exp] 57 / 4e-10 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10038038 [exp] 54 / 3e-09 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10004132 [exp] 0 / 1 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044000 [exp] 47 / 1e-06 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G043900 [exp] 45 / 4e-06 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 40 / 0.0001 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.005G044200 [exp] 40 / 0.0003 AT5G27220 129 / 5e-30 Frigida-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10001722 pacid=23142975 polypeptide=Lus10001722 locus=Lus10001722.g ID=Lus10001722.BGIv1.0 annot-version=v1.0 ATGTCCCCCCATGTTAAGCCACATGTCGAGAGAGAAACCTTCAGCTTTGCAAAGAACTGGAAATCCAAGCTTGCTGGTGTGAAGGGTCATTTCATCGAAG CCGTCTGTTTCTTACTATTCTTAGCTGCATACAAATTGGTAATTCATTTCGACAGAGACGACCTTTCGTGTGTTGTCCGTATTCCGACTAAACCATTCCA GATTCTTGCCTTCAACAATTATACCCCAAATAGACGTATCTCAGCACATCCCGTCCTGCACCATCCGATCCAACCATGTCTTGTTCTTCTTCTTCTTCAC TGGCTGCCCCTGACAAAAATACTCGTAAGCATTGCAGGGTGGCAGACGAAGCGCGAGAAATGCCAGGGTCCAACACGACATTCTGGCCTCCACAACATCA TTTGA
AA sequence Show only first row Show all	>Lus10001722 pacid=23142975 polypeptide=Lus10001722 locus=Lus10001722.g ID=Lus10001722.BGIv1.0 annot-version=v1.0 MSPHVKPHVERETFSFAKNWKSKLAGVKGHFIEAVCFLLFLAAYKLVIHFDRDDLSCVVRIPTKPFQILAFNNYTPNRRISAHPVLHHPIQPCLVLLLLH WLPLTKILVSIAGWQTKREKCQGPTRHSGLHNII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001722 [exp]	0	1
AT3G58760			Integrin-linked protein kinase...		Lus10037851 [exp]	5.0	0.8683
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Lus10029894 [exp]	12.0	0.8304
AT5G49180			Plant invertase/pectin methyle...		Lus10023775 [exp]	14.5	0.7573
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10016755 [exp]	20.9	0.7564
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	21.8	0.8366
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	23.1	0.8338
					Lus10038266 [exp]	26.7	0.8294
AT3G52610			unknown protein		Lus10014215 [exp]	29.7	0.8308
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	32.6	0.8330
AT1G05950			unknown protein		Lus10005129 [exp]	34.5	0.8205

Compare expression of checked genes

Lus10001722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.