Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48385 54 / 4e-07 FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004131 [exp] 689 / 0 AT5G48385 72 / 8e-13 FRIGIDA-like protein (.1) Lus10033828 [exp] 237 / 2e-64 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10038038 [exp] 120 / 1e-27 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10009979 [exp] 118 / 9e-27 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10004132 [exp] 68 / 2e-11 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1) Lus10033831 [exp] 66 / 1e-10 AT5G27220 153 / 2e-37 Frigida-like protein (.1) Lus10042540 [exp] 66 / 1e-10 AT5G27240 210 / 4e-56 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10042965 [exp] 56 / 1e-07 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10032466 [exp] 55 / 2e-07 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043900 [exp] 110 / 2e-24 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044000 [exp] 108 / 7e-24 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G044100 [exp] 104 / 9e-23 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.007G050800 [exp] 57 / 5e-08 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 52 / 1e-06 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.002G239900 [exp] 49 / 1e-05 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10001723 pacid=23142976 polypeptide=Lus10001723 locus=Lus10001723.g ID=Lus10001723.BGIv1.0 annot-version=v1.0 ATGGACGAAAGACGCTTAGTAGTTGGACAAGACGTTTCAGTCGGCGGCAACGGCAGTGCAGAGTCGAGAACGGTGCATGGAGGAGACACGATAGGCCAAC TCCGGGACCGCGCGTCATGGATAGTATCCTTCGCGGCGCAGTTGGACTCCACCGCGGCGGCGCTCAACGCTCAATCGGAGGAGGTGCGGCAGGCGGAGGC GGACGCGGCGGAGAGGCTGAAGGAAGTCGAGATGAAGGAGGAGGCGTTGGAGTTGATGATGAAGACGGAGATGGAGAGGCTGAAGGAGCAGGAGGATTCC GCAGAGAGGTTGAAGACGCAGAGCGCGTCGGAGAAGGCGATTGCGGAGGCGAAGTTGAAGGAGCTCGCGGAGAAGGAGGAGGAGTTTGAGGCGCTCGGTA GTTACGTCGAGTTGAGAGCGATTCGAGTTCGGGAAGCCGAGGAAGAGATTGCCGTGAAGAGAAAGGAGTTGGAGGAGATAGAGGCGGAGATTGAACTGAA GAGGAAGGAGTTGGAAGAAAATTCGGCGGAGTTCCGGCGGAAGCAGGTCGAATTTGAGGTACGTGTTATTGAATCAAGTGTTAAAGAGAGGGGAAATGGT GAGGAAGATTTGAATGGTGAATTTGAGGAGAGAGTGAATGAATTCAATAGAAAGGATTCAGAATTAAAATTGCGTTTGGATGAGTTGAACAAAAAGGAGA AGGAGGTAAATGACAGAGAGAACAAGTCCAGAGAGCTTGAATGTAGATTAGAACAGTCGTTGGGAAATTTCAAGTTGCTCAAAGACGAGTTTCGAGATCG ATTAGTGGAGTTTGAAGCAAAGGAGGTCGAGTTCAGCAAGAAGGAGAAGGAGATAGATGACAGGGAGAAACAGTGCAGAGAGCTTGAATGTAAAGTAGAA CAGTCGTTGGCTGATTTCAAGGTGCTCGAAAAGGGGTTTCAAGATCGATTTGTGGAGTTCGAAGCAAAGGAGGTTGAGTTCAGCAAGAAGGAGAAGGAGA TAGATGATAGGGAGAAACAATGCAAAGAGCTTAAGTGTAAAGTAGAACAGTCGTTGGAAGAGTTCAAGGAGCTCGAGAAGGGGTTTCGATATCGATTAGT GGAGTTCGAAGCAAAGGAGGCCGAGTTGAACAAGAGAGACAGGGAGATTGATGAGAGGGAGAAACGGTATGAAGAAGCAGAGTGTAAAGCTCGACAGTCG CAGGAGGAGTTTAATGTGATCCAGAAGGGGTATCAAGATCAGACTGCGAAGTTAAAAGCAAACGAGGTGAAGTTCGAGGAGTCTGTGCAAGGATTGAAAG AGAAAGAAAGGGATATAGAGGAGAAAGAGAAGGCTGTTGAGGAAAGGATTAAGGTTATCAAAGTGATGGAGGAAGGGCATCAGAAGAATGTGGAGGAGTT TGGAGTAAAAGTCCGACAATGGTACGATGATACCAAGGCTAAGGAGATTCGGTTTCTTGGGCTAGAGGAGAAAGAGAAAGGTATTGAGCAAAGGCTTAAG GACGTTAAAGCGAGGGAGGAAGCGCATGAAAAGAAACTCGAGGAGTTTCGAGTCCAAGTCAAGGGTTGGTATGATGATCTCGAGGCTAGGGAGACGAGTT TACTGGTGCAATCTAATAATGTCAAGGCTAGGGAGACAAGAATGGTTGAGCAATTTGATGATTTTAGACAGGAAAGAGCCTTGTTTGTGGAAGCTTCGAA TAGTTTAAAAGCTAGAGAGAAGGAAATTGATGCCAGAGATATGGTGTCTAGGAGATTAGAATTGGAGCTGAAATGGAAAGATGAGCAATTAGCCCAGAGA TGGAAAGAATTCGAAGCAAAAGAAGCGATGGTCAAGAAACATGGTGATGAATTGGCAGTGAAAGAGAGGGCGATCGACCGGAAAGAAAATCAGCTCAAAG AGCTCGAACAGCAGTTGGAAGAGTCTAAAGGTAGAGAAGCGAACCTTGAGAGATGCTCTAGCGAACTGGTTGCGAAAGAAAGAGGCTTCGAAGCAAAAGA AAAGCGGCTTCAAGAGCTTGAATTTAAAGTGCAGGATTATAAGAAAAGACTAGCAAGGTTTCAAGTGTATGACAGTAAATATAAGAGCCTGAAGGTGAGG GAGAAGGTAATTGAAGACCAATTCAAGCTGATTGGCAAGAGGATGGAAGAAGTGGCACTTAAGGAGAAGCAATTTCAAGAGAGGCTGCACAAGGAAGGCC ATTCGGAAGATAAGAGGAAGTCGGCAGAAACGATGAACAAGAAGCAGGCCGAGGTGACGAGTACAGAATCTGCACCGAATGCAGAGTCGCGTTTGTCTCA GATGAAGGTTGAGCCGATGGTTGCTTCCAGTTCGTCAGGAACGACGAAGGACAAGCAGGGAGTCGAGATTTCCAACAGAGATTCTGCACGAAAAGCAGAT TCAACTTCGTCGCAAGCGAAGGTAGAAGGGATAGATGCTGCGCCCAGTTCATCAGATAATCCATCAGAAGGGATCATTAGGTTCAGCGTTATAATGACTG GAAAAGACCTGCAAATTTTCTTGAATGAACGTTCCAAGGAACTGCGTTCAATGGCGAACGAAGTGGACAGTGAGCTGAAACTTTCGTCAGACCCTGCAAA TCTCGTGTTGGATGCAATGGAAGGATTCTACCCTCCCCATATGAAGAAAGGGGATGTCGAGTTCGAAACCGGTGTGATCAGAAAGACTTGCGTAATGCTC TTGGAAAGGGTTGGGCGCTCAATATGGGCAGACTCGCAAACCCGGTGA
AA sequence Show only first row Show all	>Lus10001723 pacid=23142976 polypeptide=Lus10001723 locus=Lus10001723.g ID=Lus10001723.BGIv1.0 annot-version=v1.0 MDERRLVVGQDVSVGGNGSAESRTVHGGDTIGQLRDRASWIVSFAAQLDSTAAALNAQSEEVRQAEADAAERLKEVEMKEEALELMMKTEMERLKEQEDS AERLKTQSASEKAIAEAKLKELAEKEEEFEALGSYVELRAIRVREAEEEIAVKRKELEEIEAEIELKRKELEENSAEFRRKQVEFEVRVIESSVKERGNG EEDLNGEFEERVNEFNRKDSELKLRLDELNKKEKEVNDRENKSRELECRLEQSLGNFKLLKDEFRDRLVEFEAKEVEFSKKEKEIDDREKQCRELECKVE QSLADFKVLEKGFQDRFVEFEAKEVEFSKKEKEIDDREKQCKELKCKVEQSLEEFKELEKGFRYRLVEFEAKEAELNKRDREIDEREKRYEEAECKARQS QEEFNVIQKGYQDQTAKLKANEVKFEESVQGLKEKERDIEEKEKAVEERIKVIKVMEEGHQKNVEEFGVKVRQWYDDTKAKEIRFLGLEEKEKGIEQRLK DVKAREEAHEKKLEEFRVQVKGWYDDLEARETSLLVQSNNVKARETRMVEQFDDFRQERALFVEASNSLKAREKEIDARDMVSRRLELELKWKDEQLAQR WKEFEAKEAMVKKHGDELAVKERAIDRKENQLKELEQQLEESKGREANLERCSSELVAKERGFEAKEKRLQELEFKVQDYKKRLARFQVYDSKYKSLKVR EKVIEDQFKLIGKRMEEVALKEKQFQERLHKEGHSEDKRKSAETMNKKQAEVTSTESAPNAESRLSQMKVEPMVASSSSGTTKDKQGVEISNRDSARKAD STSSQAKVEGIDAAPSSSDNPSEGIIRFSVIMTGKDLQIFLNERSKELRSMANEVDSELKLSSDPANLVLDAMEGFYPPHMKKGDVEFETGVIRKTCVML LERVGRSIWADSQTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48385			FRIGIDA-like protein (.1)		Lus10001723 [exp]	0	1
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	3.6	0.7820
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	6.3	0.7712
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	16.7	0.7184
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10005990 [exp]	19.4	0.7256
					Lus10014959 [exp]	20.1	0.6827
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	25.8	0.6780
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	28.9	0.6906
AT4G12710			ARM repeat superfamily protein...		Lus10041090 [exp]	29.4	0.7281
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10036483 [exp]	29.6	0.6583
					Lus10031351 [exp]	31.9	0.7067

Compare expression of checked genes

Lus10001723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.