Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36020 41 / 4e-05 CSDP1 cold shock domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004131 [exp] 188 / 9e-57 AT5G48385 72 / 8e-13 FRIGIDA-like protein (.1) Lus10015039 [exp] 39 / 0.0003 AT3G53500 256 / 8e-85 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10003987 [exp] 39 / 0.0003 AT3G53500 255 / 2e-84 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10027475 [exp] 38 / 0.0006 AT5G52380 261 / 1e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10025280 [exp] 38 / 0.0006 AT3G53500 184 / 2e-57 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10039230 [exp] 37 / 0.0007 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G215200 [exp] 37 / 0.0008 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.016G081700 [exp] 37 / 0.0008 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.009G155500 [exp] 37 / 0.001 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001724 pacid=23142985 polypeptide=Lus10001724 locus=Lus10001724.g ID=Lus10001724.BGIv1.0 annot-version=v1.0 ATGGATGGTAACGACATCGCGAAACGAGCGAAACAACCACATCAGAAGCCGCCACCATGTGCTCATTGTGCAAAATATCACTTGGGAGAATGTCGATCAA ACGCGGCGGCCACAACCCAGCATCCACTGTGTACTCGCTGCAGCAAACGGCACCAAGGAGAATGCCGTCTCCCATCAGATCAATGCTTCAACTGCGGAGA CTCGGGCCACATTTCATGTAATTGCCCTCGCGCTAAGGGTTCGGCCAGTCTGAAGGAATGCCACAAATGTGGGGCTAAAGGTCATTTTGTGCAGAATTGC TCCTTCGGTAAAGGCTGA
AA sequence Show only first row Show all	>Lus10001724 pacid=23142985 polypeptide=Lus10001724 locus=Lus10001724.g ID=Lus10001724.BGIv1.0 annot-version=v1.0 MDGNDIAKRAKQPHQKPPPCAHCAKYHLGECRSNAAATTQHPLCTRCSKRHQGECRLPSDQCFNCGDSGHISCNCPRAKGSASLKECHKCGAKGHFVQNC SFGKG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10001724 [exp]	0	1
AT4G38260			Protein of unknown function (D...		Lus10013833 [exp]	6.5	0.7488
AT1G23770			F-box family protein (.1)		Lus10006138 [exp]	10.0	0.7584
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	13.3	0.7549
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10027938 [exp]	23.0	0.7225
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	69.3	0.7133
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	72.6	0.7260
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	76.7	0.7049
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001842 [exp]	87.8	0.6407
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10002948 [exp]	89.4	0.6930
AT3G25570			Adenosylmethionine decarboxyla...		Lus10034412 [exp]	95.7	0.6848

Compare expression of checked genes

Lus10001724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.