Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06350 316 / 5e-100 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004130 [exp] 977 / 0 AT3G06350 398 / 3e-132 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10033981 [exp] 407 / 5e-136 AT3G06350 752 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10012797 [exp] 395 / 1e-131 AT3G06350 748 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10040908 [exp] 343 / 2e-112 AT3G06350 291 / 2e-92 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10005928 [exp] 204 / 2e-60 AT3G06350 180 / 9e-52 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043400 [exp] 682 / 0 AT3G06350 508 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029900 [exp] 680 / 0 AT3G06350 516 / 4e-179 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.014G135500 [exp] 476 / 2e-163 AT3G06350 444 / 8e-151 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.010G019000 [exp] 404 / 5e-135 AT3G06350 736 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029800 [exp] 382 / 1e-126 AT3G06350 630 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.008G196100 [exp] 163 / 3e-46 AT3G06350 326 / 1e-108 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF08501 [flax] [poplar] Shikimate_dh_N Shikimate dehydrogenase substrate binding domain CL0036 [flax] [poplar] TIM_barrel PF01487 [flax] [poplar] DHquinase_I Type I 3-dehydroquinase
Representative CDS sequence Show only first row Show all	>Lus10001725 pacid=23142980 polypeptide=Lus10001725 locus=Lus10001725.g ID=Lus10001725.BGIv1.0 annot-version=v1.0 ATGGGTCTGATGGGTCGGGTCGGGAGTCGGGTTGCTCTGCCTCCGTTGGTTTGTGCGACGGTGATGGGGGATTCGGTTGAGCAAGTGGTGGATGAAATGC AGGCTGCCAAGGCTCAAGGTGCTGACGTTGTGGAGGTCAGGCTTGACGTCATCAATGGCGGTTCTTCTTCTGGTGAGCTGGAAATCTTGTTGCGGGATAA GGCATTGCCTGTTATCATTGTTTGCAGGCCTAAATGGGAAGGTGGTCATTATGAAGGAGAAGAGAACTCAAGGTTGGAAACTCTTTACTTGGCTTCTCAA ATGGGAGCTGATTACATTGACATTGAGCACAAGGCTTCTTCTTCTGGTGTGATGGAAGAACTGAGGAAGAGGAGCCATTTCAACAGCAAGATCATTGTGT CCTGCAATTTGAATGGTCCAACTCCTTCAAAGGAAAATCTGACCAAGTTGGTTAGATCCATGGCGGCTCTGGAACCGGACATCATCAGGATTGTATCGAA TGTGGATAGCATCACGGAGATTGAGAGGATCTTCCATCTGACTTCCAATTCTCAGGCATGGACACTATTCCACTGTTTATTTTTTTGTGACATCGTTCTA CCGTTAGACTCACTAGTTCCAATAGTTGCATACTCGGCCGGGGAAAGAGGTCTGATAAGTCAAATTCTGACCCCAAAATACGGTGGAGCTTTAGTCTATG GATCCATGGAAGGAAAACCGGTTCCCGGGTTGCCTACTTTAACCAGCTTGAGAGAAGAAGCCTATGAAGTTGAGTGCATCAACTCAGAGACACAAGTTTT CGGGTTGATTTCGAAACCGGTTGGCCACAGTAAAGGCCCCTTGCTGCATAATCCTGCTTTCAGACATGTGGAGTACAATGGAGTCTATGTCCCTATGTTC GTCGATGATCTCAGAGAGTTCTTTGAGGCTTATTCTCATCCTGACTTCCATGGATTCAGTATTGGGTTTCCATACAAAGAAGCTGTTGTGGAGTTCTGTG ATGAAGTCCATCCACTTGCCAAGACTATAGGTGCTGTTAATACCATAGTGAGAAGAACAAGTGATGGGAAGTTGATAGGTTACAATACAGACTGTGAAGC TTCAATAACAGCCATTGAAGATGCTCTCAAAGGTAAAAGATCTCATATCTACTCATTCCAACTGGTTCAAAAAGCTCTCAAAGTTTCTCTACTCATTCCA ACTGGTCCAACCACACTGTCGACCGAACTAAACCGATTCACGAAGCTGAATTTTTCGGTTTCAGAACAGGGAGACTCCAATGGAAGTGTGGTGGCTTCTT CCAAGTCTCCACTCGCAGGGAAGCAGTTTGTCCTTGTTGGAGCTGGAGGAGCTGGAAGGGCGCTTGGCTTTGGTGCCAAGACAAGAGGAGCCCGTGTCTT AATTTTCGACATTGATTTCTTGAGGGCCAAGTCACTGGCTAAGGATGTCTATGGCGAAGCACGCCCTTTTGAGACCCTGCCAAGTTTCGAGCCTGAGGAT GGTGCAATTCTTGCTAATGCCACACCGGTAGGGATGCATCCGAGCACGGACAGGATCCCTGTTGCTCAGGCAAGCTTGGCGAGATACAGAGTGGTGTTCG ATGCAGTGTACACTCCGAGGAAGACGAGACTGTTGAAAGATGCTGATGCTGCTGGTGCAATCATTGTGAGTGGAGTTGAGATGTTCCTTAGACAAGCCAT TGGACAGTTCAAACTCTTCACTGGCAAACAAGCACCTGAAGATTTCATGAGGGAGATTGTTATGGCCAAGTTCTGA
AA sequence Show only first row Show all	>Lus10001725 pacid=23142980 polypeptide=Lus10001725 locus=Lus10001725.g ID=Lus10001725.BGIv1.0 annot-version=v1.0 MGLMGRVGSRVALPPLVCATVMGDSVEQVVDEMQAAKAQGADVVEVRLDVINGGSSSGELEILLRDKALPVIIVCRPKWEGGHYEGEENSRLETLYLASQ MGADYIDIEHKASSSGVMEELRKRSHFNSKIIVSCNLNGPTPSKENLTKLVRSMAALEPDIIRIVSNVDSITEIERIFHLTSNSQAWTLFHCLFFCDIVL PLDSLVPIVAYSAGERGLISQILTPKYGGALVYGSMEGKPVPGLPTLTSLREEAYEVECINSETQVFGLISKPVGHSKGPLLHNPAFRHVEYNGVYVPMF VDDLREFFEAYSHPDFHGFSIGFPYKEAVVEFCDEVHPLAKTIGAVNTIVRRTSDGKLIGYNTDCEASITAIEDALKGKRSHIYSFQLVQKALKVSLLIP TGPTTLSTELNRFTKLNFSVSEQGDSNGSVVASSKSPLAGKQFVLVGAGGAGRALGFGAKTRGARVLIFDIDFLRAKSLAKDVYGEARPFETLPSFEPED GAILANATPVGMHPSTDRIPVAQASLARYRVVFDAVYTPRKTRLLKDADAAGAIIVSGVEMFLRQAIGQFKLFTGKQAPEDFMREIVMAKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10001725 [exp]	0	1
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	3.0	0.8834
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011861 [exp]	3.9	0.8371
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	5.5	0.8372
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	8.9	0.8033
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10029122 [exp]	10.2	0.8219
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	11.2	0.7802
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	12.8	0.7904
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	13.1	0.8008
AT5G38260			Protein kinase superfamily pro...		Lus10025554 [exp]	16.8	0.8139
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	17.4	0.8321

Compare expression of checked genes

Lus10001725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.