Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18750 316 / 8e-94 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G27240 228 / 5e-62 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04960 216 / 5e-61 Domain of unknown function (DUF3444) (.1), Domain of unknown function (DUF3444) (.2), Domain of unknown function (DUF3444) (.3), Domain of unknown function (DUF3444) (.4) AT3G04980 195 / 4e-51 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G27980 184 / 3e-49 Domain of unknown function (DUF3444) (.1) AT3G05110 179 / 3e-49 Domain of unknown function (DUF3444) (.1) AT3G06340 184 / 8e-49 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G18740 179 / 1e-48 Domain of unknown function (DUF3444) (.1) AT5G18730 176 / 5e-47 unknown protein AT5G53150 168 / 3e-43 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004129 [exp] 1666 / 0 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 754 / 0 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 747 / 0 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 283 / 2e-83 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10042540 [exp] 274 / 1e-78 AT5G27240 210 / 4e-56 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10039019 [exp] 242 / 5e-70 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10018975 [exp] 248 / 2e-69 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027316 [exp] 240 / 4e-69 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012795 [exp] 214 / 5e-58 AT5G18750 311 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G029500 [exp] 373 / 5e-113 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 365 / 3e-110 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 228 / 4e-62 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 194 / 4e-55 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.015G097500 [exp] 182 / 9e-48 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 177 / 8e-46 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 176 / 1e-45 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 174 / 5e-45 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 174 / 8e-45 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 172 / 2e-44 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10001726 pacid=23142981 polypeptide=Lus10001726 locus=Lus10001726.g ID=Lus10001726.BGIv1.0 annot-version=v1.0 ATGGAATGCAACAAAGAGGAGGCAGTAAGAGCGATGGAACTTGCAGAGAAGAAAATGCAAGCGGGTGATTTTGCCGGGGGAAGGAAGATGGCCCTGAAAG CGCAAAAACTCTATCCAGACATTGAAAATGTGCCTCAATTGTTAGTTGTTTGTGATGTTCATTCTTGTGCTGCTAACAAGATAAACGGTGTGGACCTTGA CTGGTATGCCATTCTCCAGATTGAGCGGTTCTCGAATGAAGCAGTCATCAAGAAGCAGTATAAAAGGCTTGCACTTGCACTTCACCCGGACAAGAACAAG TGCCCTGGTGCAGAGGCTGCTTTCAAACTCATCGGTGAAGCGAATAGAGAACTTACAGACCCAACAAGGCGTTCTCTGTTTGATTCAAAATTTAGAGGGC CGGTAAGGCCAGCTGCACAGAAAGTAACAGTGAAGGAGACTAAAGCGTTTGCTGCAAAGAAGCAACCTAATGTATTTCCTCAGAACCAATACATGGGGCC ACAATCTTATTCGCAGCCGCAACAGCAAACGTTTTGGACCTGCTGCCCTTCTTGTAAAGTAAAGTTTCAGTATTATTCGAACTATCTTGATCAGACGTTG CGTTGTCAACATTGCCAGCAGACTTTCGTTGCAAATGATGTGGGCCCTGTTGGTCAGGAAGGTTTCGATGTTCAAGGTCCAAGTTATATTGGTCTGCAAA GTAATGGTGCTCGGAACTATGCCTTTGCAGGTGTGGAGTTGAGACCTAGTGGGGGGAATTCTTCTACTGGCGTTCCTGGAATGTCTAAAACTGCTGGTGT CCCGAATGGAAATCACCGTGCAGGAGGAATTGTACGCCGTACTCTCCCCAAGCGTACTGCCAGAAAGCGCTCAGGTCATGCAGGTGACAATGGTGGATCT GCTTTGAAAAGGTCGAGGGAGAAAGATGAAAAAGAAAGTCTGTCTAGGAAGAAGAGTAAAACTGATGTCTCAGAGAAACTGGAGGTAAATGATATTGACA ATGGGCATGAATTCGAACTAGGTAGAGAACAGCTTGATTGTCCTGATGTGGAGTTCAGTGATTTCGGCAAAGACAGGTCTGTGAATTGTTTTAATGTTGA TCAGATATGGGCTATATATGATGAACTCGATGGTATGCCTCGGTTCTATGCTCAGATCAGGAAAGTGCTGTTATCAGGGTTTAAGCTACAGGTCACTTGG CTGGAGCCTTGTCCTGATACGGATCGAAAATTTCCCATCTCGTGTGGTGCGTATAAGATTGGAGAACCTGACGAATTAGATCGTCTGGTGTTTTCACATC AAATTTATTGCAATAGAGAGAAACAAAAGGACCAAGCTTACATGATCTACCCCATGAAGGGGGAGACTTGGGCCCTATTCAAGGATTGGAGTTCTGAACC GGACAAGCTTAGAGCACCGTACAGCTATGAGTTTGTCGAGATTTTATCCGATTTTACGGAGGAAGTTGGTGTTGGGATTGCTTGTCTAGGCAGAGTGGAA GGCTTTGTTAGCATCTTTCAGAAAGCTACACATGATGGGACTATCTCCTTCTGCGTAAAGCCTTCCGAACTGTGCAGATTTTCGCATCGGATCCCATCAC GCAGGATGACCGGGAAGGAGAGGGAAGGTGTACCTGCTGATTCTTTCGAGCTCGACACAGCTGCACTTCCTGCTAGCCTTTATAGCAATTTCATCCATGC ACAGCCAAGAAGCGTATATCACAGTGAGGAACCAGCAACTGCAAGGCACAATCAGAAGTCCTGGACAGAGTGGACAGAGAAGTTCAGCGGGAGGAGTATT GTTTGTGGATTATCTGCAGAGATACCAACCGGTGCTCGCTCTATACACAAAGCGAGCAATCGAGGAAATTCGAGCCGTTCCAGTGATGTGGCAGCTGCAA GTAGTTCCCAACCCAAAGGAGGAGGGGCAAGTACGTCATTTCAGCCCCAGGTGAAATTCAATTCCGCGGAGATGTCGCCCAGAAGATTTCGTAAGGACTC AAGCAAAGGAAATGGTAATGCTGATGTTAACTCGAACCAGCCACCGATTATTAGCGTGGATGATGATGATGCTGACAAGCAGAAGGATCCACCGGAAGTC CCGGATTCCTCAGCCAAGCGGAAAGTCTCACTTGAAGTGGAAAAGCACGATTTCAGCAAGAAGAGGACGGAGGACCAGTTCAAAATCGGTCAGATATGGG CGATTCGGAGCAACGAAGACCAGATGCCGAAAAATTACGCTCTGGTAAAGAAGATTGAACACGCCCCTTTCAGAGTACATGCAGCGGTTCTCGAGTCGTT AGCTTTTGTCAGTGGCTCGATTCACACTCGTAGCTACGGGTCGTTCAGCGAAGGGAGAACCGAGGTTCTTCCCATCGCTCGTTTCTCGCACGAGGTGGAG CAGACTAGATTGTCAGGGAAGAACAAGGTCGAGATCTACCCTAGGAAAAACGAGATATGGGCAGTGTCCAACAAGAGCAATGGAAATGGAGAATGCGAGA TCGTCCAGGTGATGGAGAAGAAAGGCGAGAAAGTTGAAGTCATGGCCTTGACGCCATTGAAGAAGTTCAGCGGATTCGAGTCCTTCTACCGATTGCCCAG CAGGAAACCGAAAGCTTCTGTACTGGAGATCAGCAGATTCTCTCATCAGTGTCCAGCTTACTACCACCATAACGTTCTGAATGGATGCTGGGAGCTCGAT GCTTCGTCGGTCCCCAGTCAGGTCATCCTTCTCGAATGA
AA sequence Show only first row Show all	>Lus10001726 pacid=23142981 polypeptide=Lus10001726 locus=Lus10001726.g ID=Lus10001726.BGIv1.0 annot-version=v1.0 MECNKEEAVRAMELAEKKMQAGDFAGGRKMALKAQKLYPDIENVPQLLVVCDVHSCAANKINGVDLDWYAILQIERFSNEAVIKKQYKRLALALHPDKNK CPGAEAAFKLIGEANRELTDPTRRSLFDSKFRGPVRPAAQKVTVKETKAFAAKKQPNVFPQNQYMGPQSYSQPQQQTFWTCCPSCKVKFQYYSNYLDQTL RCQHCQQTFVANDVGPVGQEGFDVQGPSYIGLQSNGARNYAFAGVELRPSGGNSSTGVPGMSKTAGVPNGNHRAGGIVRRTLPKRTARKRSGHAGDNGGS ALKRSREKDEKESLSRKKSKTDVSEKLEVNDIDNGHEFELGREQLDCPDVEFSDFGKDRSVNCFNVDQIWAIYDELDGMPRFYAQIRKVLLSGFKLQVTW LEPCPDTDRKFPISCGAYKIGEPDELDRLVFSHQIYCNREKQKDQAYMIYPMKGETWALFKDWSSEPDKLRAPYSYEFVEILSDFTEEVGVGIACLGRVE GFVSIFQKATHDGTISFCVKPSELCRFSHRIPSRRMTGKEREGVPADSFELDTAALPASLYSNFIHAQPRSVYHSEEPATARHNQKSWTEWTEKFSGRSI VCGLSAEIPTGARSIHKASNRGNSSRSSDVAAASSSQPKGGGASTSFQPQVKFNSAEMSPRRFRKDSSKGNGNADVNSNQPPIISVDDDDADKQKDPPEV PDSSAKRKVSLEVEKHDFSKKRTEDQFKIGQIWAIRSNEDQMPKNYALVKKIEHAPFRVHAAVLESLAFVSGSIHTRSYGSFSEGRTEVLPIARFSHEVE QTRLSGKNKVEIYPRKNEIWAVSNKSNGNGECEIVQVMEKKGEKVEVMALTPLKKFSGFESFYRLPSRKPKASVLEISRFSHQCPAYYHHNVLNGCWELD ASSVPSQVILLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	0	1
AT3G21295			Tudor/PWWP/MBT superfamily pro...		Lus10037614 [exp]	3.5	0.7390
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	4.1	0.7749
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10001480 [exp]	6.2	0.7463
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	11.0	0.7510
AT4G10925			Nuclear transport factor 2 (NT...		Lus10032407 [exp]	16.7	0.7087
AT3G15120			P-loop containing nucleoside t...		Lus10017935 [exp]	17.0	0.7206
AT5G63830			HIT-type Zinc finger family pr...		Lus10003211 [exp]	17.0	0.7055
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10029613 [exp]	24.2	0.7000
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Lus10034313 [exp]	25.1	0.6044
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10019121 [exp]	28.0	0.6305

Compare expression of checked genes

Lus10001726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.