Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08845 268 / 8e-93 Ribosomal L18p/L5e family protein (.1.2) AT3G20230 107 / 1e-29 Ribosomal L18p/L5e family protein (.1) AT3G22450 91 / 4e-22 Ribosomal L18p/L5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004129 [exp] 374 / 6e-124 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10020797 [exp] 116 / 1e-32 AT3G20230 238 / 1e-80 Ribosomal L18p/L5e family protein (.1) Lus10007379 [exp] 116 / 1e-32 AT3G20230 234 / 3e-79 Ribosomal L18p/L5e family protein (.1) Lus10006115 [exp] 115 / 4e-31 AT3G22450 231 / 6e-74 Ribosomal L18p/L5e family protein (.1) Lus10010558 [exp] 114 / 1e-30 AT3G22450 238 / 8e-77 Ribosomal L18p/L5e family protein (.1) Lus10021433 [exp] 38 / 0.001 AT3G45020 200 / 8e-68 Ribosomal L18p/L5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G029300 [exp] 303 / 1e-106 AT1G08845 295 / 1e-102 Ribosomal L18p/L5e family protein (.1.2) Potri.013G108700 [exp] 116 / 6e-33 AT3G20230 226 / 6e-76 Ribosomal L18p/L5e family protein (.1) Potri.019G081000 [exp] 117 / 7e-33 AT3G20230 249 / 4e-85 Ribosomal L18p/L5e family protein (.1) Potri.008G153100 [exp] 112 / 1e-29 AT3G22450 253 / 2e-82 Ribosomal L18p/L5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00861 [flax] [poplar] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Lus10001727 pacid=23142982 polypeptide=Lus10001727 locus=Lus10001727.g ID=Lus10001727.BGIv1.0 annot-version=v1.0 ATGTTGAAGCAGGCGCTTGGGAAAGTACTGGTCAGAGAAGTTTTGACAAGTTCAATCAGCAAGCTTGGACCTTTCTCAAATGCTGCCATTAATGGCTTCC ACACTGGACAGGCACACAATGCCCCGAGAAGCTTCTTCGGGGTAGAGGACTTCCTGGACGACGACAACAGCAAGCCGTACACTTTCCAGAAGGGCAAAGT GTCGAAGAATCCGAACAAGAGTGTGTCCTTCAAGCAACGCACTCAGGCGTTCATTGAGCCCTTCACCCTGGATGTGTTCATCTCGAAACGGTTCGTGTCA GCTTCACTCACTCACAGGGTGACTAGCAAGCAGGTTGCTACTGCCGGGACGAACTCGAAGGACATCAAGGCTGCGCTCAAGTCGAGGTCGGACATTCCGG CCTGCCTAGCGATTGGCCGGATTCTGGCCGACCGGGCGAGGGAGGCTGATGTTTTCACTGCTGTCTACACTCCTAGGGAGAGGGATCGGTTTGAAGGCAA GATTAGGGCTGTGGTTCAGTCTTTGATTGACAATGGGATTGATGTCAAAGTCTATCTTGAGTGA
AA sequence Show only first row Show all	>Lus10001727 pacid=23142982 polypeptide=Lus10001727 locus=Lus10001727.g ID=Lus10001727.BGIv1.0 annot-version=v1.0 MLKQALGKVLVREVLTSSISKLGPFSNAAINGFHTGQAHNAPRSFFGVEDFLDDDNSKPYTFQKGKVSKNPNKSVSFKQRTQAFIEPFTLDVFISKRFVS ASLTHRVTSKQVATAGTNSKDIKAALKSRSDIPACLAIGRILADRAREADVFTAVYTPRERDRFEGKIRAVVQSLIDNGIDVKVYLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08845			Ribosomal L18p/L5e family prot...		Lus10001727 [exp]	0	1
AT5G45920			SGNH hydrolase-type esterase s...		Lus10000525 [exp]	1.7	0.8902
AT3G02710			ARM repeat superfamily protein...		Lus10026721 [exp]	3.5	0.8810
AT5G55140			ribosomal protein L30 family p...		Lus10031912 [exp]	3.9	0.8729
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10034210 [exp]	15.0	0.8655
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	15.8	0.8680
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	16.1	0.8698
AT3G62140			unknown protein		Lus10038035 [exp]	19.3	0.8679
					Lus10003137 [exp]	19.4	0.8489
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	19.6	0.8504
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	20.0	0.8527

Compare expression of checked genes

Lus10001727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.