Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32910 180 / 8e-48 DCD (Development and Cell Death) domain protein (.1) AT5G61910 139 / 3e-34 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT3G11000 98 / 3e-21 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT2G35140 92 / 6e-19 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT5G01660 82 / 6e-16 unknown protein AT5G42050 65 / 5e-11 DCD (Development and Cell Death) domain protein (.1) AT3G27090 59 / 2e-09 DCD (Development and Cell Death) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004128 [exp] 717 / 0 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10032534 [exp] 127 / 1e-30 AT5G61910 169 / 3e-45 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10017137 [exp] 92 / 6e-19 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018316 [exp] 91 / 1e-18 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Lus10012220 [exp] 85 / 3e-17 AT5G01660 224 / 1e-66 unknown protein Lus10018307 [exp] 75 / 2e-13 AT5G01660 276 / 3e-82 unknown protein Lus10023059 [exp] 59 / 4e-09 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10032412 [exp] 59 / 7e-09 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10041557 [exp] 57 / 2e-08 AT3G27090 428 / 2e-152 DCD (Development and Cell Death) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G042700 [exp] 230 / 2e-66 AT2G32910 198 / 3e-55 DCD (Development and Cell Death) domain protein (.1) Potri.005G043100 [exp] 229 / 8e-66 AT2G32910 201 / 6e-56 DCD (Development and Cell Death) domain protein (.1) Potri.013G029200 [exp] 222 / 3e-63 AT2G32910 187 / 3e-51 DCD (Development and Cell Death) domain protein (.1) Potri.001G136300 [exp] 144 / 1e-37 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.016G127600 [exp] 96 / 2e-20 AT5G01660 628 / 0.0 unknown protein Potri.015G122300 [exp] 94 / 2e-19 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.008G074200 [exp] 91 / 2e-18 AT5G01660 488 / 2e-164 unknown protein Potri.001G088800 [exp] 61 / 1e-09 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.003G141900 [exp] 60 / 4e-09 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.017G069100 [exp] 54 / 1e-07 AT3G27090 426 / 1e-151 DCD (Development and Cell Death) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10539 [flax] [poplar] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Lus10001728 pacid=23142973 polypeptide=Lus10001728 locus=Lus10001728.g ID=Lus10001728.BGIv1.0 annot-version=v1.0 ATGGATACGGAATTTGAGAATCAGAATGAAGGAGCTAAAGATCCTGCACATTCCCCTGCAAAGTCTCAGTTAGCTGAAGAGAACAACAAGGAACATGTAG CTGAACAGGATAAGGAGGGAGCTAAAGCTACTGTAGAGTCTGCGGAAAAGCTGGATTCAGCTGATGGGAAGACGATTGTGGAAGAGGAAATTCCTGGGAA AGAAGAAACAAACGGAGTTCAAGTAGGCGAGGAGAAGAATGGGGAAACTGAGAATGTGGTGGAAACATCAAACAAAGACGACACATCCTATGGGACTCCA AGGCGTTTGCGGGTTAGAGCTAAAGTTGTAAAGAAATCTCCTGCTGGCAGATTGGTGAAGATGGGGAAAGCAGTACTTACTGCTGAAGTTCCATTTGAAT CCTCTACTGAGATGCCGTCTGCTGATGATCAGATGACTGACTTCAAAAGTCCCGAGGAAGAAACCACTGCTCCTGAAATCGACGAGGAGAAGAAAGAGAA AGCTGAGAGTCATGTGGAAGCGTCACCTAGAGCAGGCCCATTGAAAAAGACTCCAGCTTCATTACGGGTTAGGCCTAAAGTGGTTAAGAAAGCTGCTGCT GGGAACTCCATGAAGGCAAACAGTGCAGTAGATACTTCTGCAACGGGTACCAAACAAGTGAAGAAGAAACTTGTGAAGAAGAAGATTGTGAGAGTAGTCA AAAAAGGGAGTGGTGGGAATGAAAATGGAGTTGCGAAGAGTTTGGGTGCTTCTGAGGATGGACAGAAGGATACTGAGGATGTACAGAAGGATACCGAGGA TGTACAGAAGGATATTGATGACAAAGACGCCACTGAGAAAGACCAAGTGACCCCGAATGATGAAGAACAAGTTATTGGCGAGTCGAGGAAGGCTCAAGAG AACCAAATGGATAACGGGAAGCAAACTGGTCCGAGGAGAAGGATACGGAAGAGAAAGCGAAAAACTGCTGGTGGGGCAGTGAGTCAGATCGATCAGAAGA AAAATAGGCTTGATTGGAATGATGCAGCAAACCAGGATGAGAAGGGAAAAGACCTGCTTTCGGCTGAGGATAAGAATCAGAAAGATGAGAAGAGGAAAGG AAAGATGGATTCGAGTTCAAAAGACAAGAATCGCCGAGATGAAAACAACAAGAAGAAAGAGATAGCTGATGACAAGGGAAAGAGTGCACGAGATTCCACT CATCATGACAAGGGACTGGATGGTTTGATCTTCATGTGCAGCTCGAAGACCAAACCAGACTGTTTCAATTATCATGTCATGGGTGTGCCCAATGGGAAGA AGGACCTCGTGCTGAATATCAAACCCGGTCTCAAGCTTTTCCTTTTTGATTTCGACCTCAGACTTATGTATGGCATCTACGAGGCTTCTTCAGCTGGTGG GATGAAACTCGAACCCAAGGCATTTGGCGGCGCATTCCCATACCAGGTGCGGTTCAAAGTCTACAAAGACTGTGTTCCTCTTCCAGAGTCCACTTTCAAG AAGGCTATAAAAGAAAACTACAATAAGAAGAACAAGTTCGATTTTGAACTTACCTCTCTACAGGTCAAGAAGTTGACTGCACTTTTCCGACCGGCTGAAT TCTCACCATCGCAGTCGAAGCCATTGCTTTCCCGCCCTGCCATGGAAGCTACCCAGGACAGGGAGCCTCGCGGTGGTGGCGGTGGTGGTAGAAGAGAGCA GCATGGTTTGGACCGCGGTGGAAGAAGAGAGGTACCGCCTCGTCATCCTGGTAGAGACGGTTACAGGAAGACCAAAGGCAGTGGCAGGAGGGAGCCCCCA ATGCAGCGAAGAGAAAGAGAACAACCTTCCCCCGGAAGAAACAGGGAAGTGTTGCTGCGACCTTCACATAGACTCGAACAACCACGTCGCGAGCCGGATC TGTACATGAGCGAAAGGGAGTATCGAGCCTACGGTCTTCAAGCAGACCGAAGAAACTTGACCCCTCCGCGTCAGAGATCGAGCTTAGATCAGCCTTACTA CATAGACCATGAAAGAGATCGAGAAAGAGATCGAGCTCTCGGTAGGCAGGTGGAGCCACTGCCACCGCCGAATTACAGGGAACATCCTTTTGCGCTCCGC AGGGAAAGCGTCTGCCTCCAGCACATACCTGTCGAATCTGAGGAGGGACATTGCGTCTCTCTATGA
AA sequence Show only first row Show all	>Lus10001728 pacid=23142973 polypeptide=Lus10001728 locus=Lus10001728.g ID=Lus10001728.BGIv1.0 annot-version=v1.0 MDTEFENQNEGAKDPAHSPAKSQLAEENNKEHVAEQDKEGAKATVESAEKLDSADGKTIVEEEIPGKEETNGVQVGEEKNGETENVVETSNKDDTSYGTP RRLRVRAKVVKKSPAGRLVKMGKAVLTAEVPFESSTEMPSADDQMTDFKSPEEETTAPEIDEEKKEKAESHVEASPRAGPLKKTPASLRVRPKVVKKAAA GNSMKANSAVDTSATGTKQVKKKLVKKKIVRVVKKGSGGNENGVAKSLGASEDGQKDTEDVQKDTEDVQKDIDDKDATEKDQVTPNDEEQVIGESRKAQE NQMDNGKQTGPRRRIRKRKRKTAGGAVSQIDQKKNRLDWNDAANQDEKGKDLLSAEDKNQKDEKRKGKMDSSSKDKNRRDENNKKKEIADDKGKSARDST HHDKGLDGLIFMCSSKTKPDCFNYHVMGVPNGKKDLVLNIKPGLKLFLFDFDLRLMYGIYEASSAGGMKLEPKAFGGAFPYQVRFKVYKDCVPLPESTFK KAIKENYNKKNKFDFELTSLQVKKLTALFRPAEFSPSQSKPLLSRPAMEATQDREPRGGGGGGRREQHGLDRGGRREVPPRHPGRDGYRKTKGSGRREPP MQRREREQPSPGRNREVLLRPSHRLEQPRREPDLYMSEREYRAYGLQADRRNLTPPRQRSSLDQPYYIDHERDRERDRALGRQVEPLPPPNYREHPFALR RESVCLQHIPVESEEGHCVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	0	1
AT2G33730			P-loop containing nucleoside t...		Lus10031509 [exp]	2.4	0.8908
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	3.0	0.8979
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	3.5	0.8998
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	3.5	0.9117
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10014912 [exp]	5.0	0.8454
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	5.2	0.8891
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	5.5	0.8943
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10037145 [exp]	5.7	0.8893
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	6.0	0.8948
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10031498 [exp]	6.5	0.8678

Compare expression of checked genes

Lus10001728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.