Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55390 324 / 6e-93 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2) AT5G48090 308 / 2e-92 ELP1 EDM2-like protein1 (.1.2) AT3G14980 45 / 0.0003 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002269 [exp] 325 / 9e-104 AT5G55390 174 / 8e-50 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10038453 [exp] 319 / 1e-97 AT5G55390 444 / 4e-143 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10023353 [exp] 335 / 2e-96 AT5G55390 890 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10002268 [exp] 289 / 5e-90 AT5G48090 148 / 7e-41 EDM2-like protein1 (.1.2) Lus10020204 [exp] 102 / 1e-25 ND / Lus10038454 [exp] 100 / 2e-21 AT5G55390 184 / 7e-50 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10006458 [exp] 92 / 3e-21 ND 37 / 0.003 Lus10022053 [exp] 49 / 4e-05 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 48 / 6e-05 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359900 [exp] 679 / 0 AT5G55390 915 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Potri.014G163301 [exp] 58 / 3e-10 AT5G55390 56 / 2e-10 ENHANCED DOWNY MILDEW 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12047 [flax] [poplar] DNMT1-RFD Cytosine specific DNA methyltransferase replication foci domain
Representative CDS sequence Show only first row Show all	>Lus10001729 pacid=23170782 polypeptide=Lus10001729 locus=Lus10001729.g ID=Lus10001729.BGIv1.0 annot-version=v1.0 ATGGCGATGTCCGACGACGAAGAAGGAGAAATACTACCGTCCTACATCACGAACTACTACTTGATGGACAAGCAGAACGCTGCCGTTTCCTTATCGGTGC TGCCAGTTTTGTGGGACTGTAACGATGAGGTCCACGATAGCTCAGAGCTGGTAGTGTTCATTCTAGGGACATCCGATGACGGGCTCCAGGACGTGTGCAG TCGAGTCATAGGATGGAAGTTCGAATTCTCCAGTGAGGATCCGATGATGCACGTGCTCTCGAAGGACAGGCATTGGATGATTCTGCGGAAGCCGATGAAG AGCTACGAACCTGTCATACGCAGCCTCTTGGTCACGGTTCATTGGCTACATTTCAAGAAGAGGAATGTAAGGGTTTGGCTGGGGACTGGTTGGGACCATT TCTTGGAATCATGGAGTTTTCCCGAGATTGAACCGGAGAGGCAGCATCTGAGGCAACACTCGGAATTGGTGACGGAAGCTAGAAGCAAACATAAAGATTT GGCGATGGTTGAACTGATCCATTGTTCTTTCCCTTTGCTCATTAAAAGCCCTCCCCAAACATCAGCACCTGTTAAAAAGGAGGTACAAGAGGACGTTCTA CCCTGTATGGATGAAGATGAACGAACTCATGAAGAGAAAGATGAAGAAGAGCAAGAGGAAGAGAAAGAGGAAGAGGATGAAGATGAAAACTTCTTCGATA CTGTTTGTGCAATCTGTGATGACGGTGGTGATTTGTTGTGCTGCAATGGGAAGTGCTTGAGATCATTTCATCCTACCCTGGAGGACGGAGAACGATCTGG GTGCCCAAGTCTTGGCTTCAGAAGGAAGGAAGATGTTGAAGCACTTCAAAACTTCATGTGTAAAAACTGTCTATATAAGATGCATCAGTGCTTTGCTTGC GGCAGACTTGGTTCTTCTACCAAATCTCCCAGCCAAGAGGTCTATCAATGTGCATCTGCTTCCTGTGGCCATTTCTACCATGCATCATGTGTCTCAACAT TACTCTATCCTCGTGACAAATTTAAAGAAGCCGATTTTCTATGGAGAATCGGAGCCGGAGAGTCATTCATCTGCCCTTCCCATAAGTGTCATCAATGTAA GAAAGTGGAAGATATCAACATCGATGACTTGAAGTTCGCTACATGTAGACGTTGCCCGAAATCTTACCACAAAATCTGTCTCCCAGGTGGCATCAAATTT GAACCCGACGACTATAACAACCAAAGAGCTTGGGAAGGCCTGCTGAAATACCGTCGAGTTCTTATATATTGCTTGGACCACGAGATCGATGAAGAGCTAG GAACTCCGGTGAGAGACCACCTGACTTTCCCTGACCATCTTCAACAGCAAAGAGCCAAAGAGCTCATGGAACACAGGCTAAAGGCTCCTGTGGTAGAGAA ACCCAACAAGGTGCTGGAAAAGTTGCCTGCTGATGATAGGATTCCACTGAAGAAGCAACATTCTGATGCTCCAACCAAAGGGACCGAGAGAAGCTATATA GCGCAACGACTCGCTGAGAAGTTGACTCTCGAGAAAACTACAGTACTCGAGAAACGATATCCCGGTCAACATGAGCAGAAAGTTGTTTCAGTAAGCAAGC TGGTGAGAACTGAAGGAGGCAGAATGCCTGCTAAAGAGATTCACAATCCCTTGGCTGACAAGAAAGCCACATCCAGTTACCCCTATACCACGTCTTCTTC TTCTTCTTCTTCTTCTTCTTCAGTAATTAAGCCAAGCATACTCCCTCAGACAAAATTCCAATTGAAACCGCCACTTCCCACCAATAGGCGAATCCAGGAG CAGGTTGCCTCTCCTCCTCTGAGTTACTCTGCACTGAAAAATCTTACCGACCTACCATCTCTTCCCCAAGCAAGCCTAGAACAAAAGATGAAGAAGCTGA TGGAAGACTCGGCTGCTGAGTATAAGAAAGAGAAGGCCAAGATTTTGGAGAGAGCCCGTAAGGCTGGACATCACGGTCGCACCACTGGATTCGCCAAGTC TCTCACGTTTGGACGCATCGAGAACTATATCCAGGCTGCTCGTACCGCTAAAGAATCTCTAGATAACAACGGAAGTATTGACGACTCTCTAGCTGTTTCC CCAAGAGAAACTCTGACCAGTCTATACCAATGGGAGGCAAAGCTCAATGGCTACCTTACACCTTTCTTCCAGGGAATGCGATACACTTCCTTCGGCCGAC ATTTCACCAAACCAGACAAGCTCAAGGAGATTGTAAACAGGCTTCATCCGTTTGTGCTTCCCGGTGACATGATAGTCGACTTCTGCTGCGGGTCTAACGA TTTCAGCATGATGATGAAGGCGAAGCTAGACGCTGTCGGGAAACCATGCCTTTTCAAAAATTACGATCTAATCCAAACTAAAAATGACTTCTGCTTTGAG AAGAAGAACTGGATGCATGTGAATCCTAATGAGCTACCGGATGGGTCACGCTTGATCATGGGACTAAATCCACCCTTTGGGTACAAGGCTCACCTTGCTA ATGAGTTCATCAAGCAAGCTCTCAAGTTCAGACCAAAGCTCCTCATCCTCATTGTCCCCAAGGAGACCAAAAGAGTTGATGCAGTGGGACAGTACAACTT AATCTGGGAAGATGACCAGTTACTCGCCGGCAAGTCATTTTATCTACCTGGATCAGTTGACGTGAACAACAAGCGACTGGAAGGATGGAACAAAAGCACA CCTCCCTTGTCTCTCTGGAGCCGCTCCGACTGGACGGGGACCCACTTGGAAATCGCACGGAAAATCAGAAACGGCGAACTACCTTCCGTCGCCGACGAAG AAAACCATCCAGATCACACGAGTCTCGCCGCGAATCCCCACCCTAATGAAGTATCTCCTCCGGGAAGCAACCACAGCGCTAGATGCTCATCAGAACTTAC CGGTGATTCCTCCGCGGGCGCTGGTACTTCCCACGACGGCGATGAGGACGAGGACGAAAGCTTCGTGCAGCCACTGCAGAGCACATTTCCGCTGCAAACT CCTGCTAATTACTCACATTCCGACAACTCAGTACTGCCTCCTCCTCCTCCTCCGCTGCCACCACCGGAGTATCTCCCTCCCCCCCNNNNNNNNNNNNNNN NNNNNNNCCCCCGCCCGCGCCCCCCCCCCCCCCCCGCCACCTCCTTCGATGAGTTACCGTTCCGGCGACTTCTCCTTCGTGCAGAGGCCGCTGCGGAGTA CCCCAATGGGGTATTATTGGGGACCGTACTTTTATGA
AA sequence Show only first row Show all	>Lus10001729 pacid=23170782 polypeptide=Lus10001729 locus=Lus10001729.g ID=Lus10001729.BGIv1.0 annot-version=v1.0 MAMSDDEEGEILPSYITNYYLMDKQNAAVSLSVLPVLWDCNDEVHDSSELVVFILGTSDDGLQDVCSRVIGWKFEFSSEDPMMHVLSKDRHWMILRKPMK SYEPVIRSLLVTVHWLHFKKRNVRVWLGTGWDHFLESWSFPEIEPERQHLRQHSELVTEARSKHKDLAMVELIHCSFPLLIKSPPQTSAPVKKEVQEDVL PCMDEDERTHEEKDEEEQEEEKEEEDEDENFFDTVCAICDDGGDLLCCNGKCLRSFHPTLEDGERSGCPSLGFRRKEDVEALQNFMCKNCLYKMHQCFAC GRLGSSTKSPSQEVYQCASASCGHFYHASCVSTLLYPRDKFKEADFLWRIGAGESFICPSHKCHQCKKVEDINIDDLKFATCRRCPKSYHKICLPGGIKF EPDDYNNQRAWEGLLKYRRVLIYCLDHEIDEELGTPVRDHLTFPDHLQQQRAKELMEHRLKAPVVEKPNKVLEKLPADDRIPLKKQHSDAPTKGTERSYI AQRLAEKLTLEKTTVLEKRYPGQHEQKVVSVSKLVRTEGGRMPAKEIHNPLADKKATSSYPYTTSSSSSSSSSSVIKPSILPQTKFQLKPPLPTNRRIQE QVASPPLSYSALKNLTDLPSLPQASLEQKMKKLMEDSAAEYKKEKAKILERARKAGHHGRTTGFAKSLTFGRIENYIQAARTAKESLDNNGSIDDSLAVS PRETLTSLYQWEAKLNGYLTPFFQGMRYTSFGRHFTKPDKLKEIVNRLHPFVLPGDMIVDFCCGSNDFSMMMKAKLDAVGKPCLFKNYDLIQTKNDFCFE KKNWMHVNPNELPDGSRLIMGLNPPFGYKAHLANEFIKQALKFRPKLLILIVPKETKRVDAVGQYNLIWEDDQLLAGKSFYLPGSVDVNNKRLEGWNKST PPLSLWSRSDWTGTHLEIARKIRNGELPSVADEENHPDHTSLAANPHPNEVSPPGSNHSARCSSELTGDSSAGAGTSHDGDEDEDESFVQPLQSTFPLQT PANYSHSDNSVLPPPPPPLPPPEYLPPPXXXXXXXXPRPRPPPPPATSFDELPFRRLLLRAEAAAEYPNGVLLGTVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10001729 [exp]	0	1
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	1.7	0.9622
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10013762 [exp]	2.2	0.9486
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10008268 [exp]	6.7	0.9039
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10030800 [exp]	7.3	0.9145
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	8.4	0.9542
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10034485 [exp]	9.7	0.8761
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	9.8	0.9478
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026013 [exp]	10.6	0.8962
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	11.4	0.9520
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	11.7	0.9506

Compare expression of checked genes

Lus10001729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.