Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002271 [exp] 84 / 2e-20 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001731 pacid=23170791 polypeptide=Lus10001731 locus=Lus10001731.g ID=Lus10001731.BGIv1.0 annot-version=v1.0 ATGGCCGCCGTTGAGGTTGTTTCAGCTCAAACTGCATTCCAAGAGGAGAAGCCTGATGACGTCATAACACAATCGGCGAAGGCAGCGCCGGCGCCTGCTA TCGTGGCGGAGGAGTCGGAGACAGCTCCTCCTGCCACGGACGAGCCGAAAGAGAAGGTGGAGGATGAAAACACCGCCGCCTCCACCGATGAAGGTGATGT GGCTCCAGCGGCGGAGAAAGTGGAAGTGGAGATAGTAGTGGTCGAGATTGAGAAAGCTGAATGCGACGTGGCACCTCCGATGGTAGCGGGAGAAGGAGGA GAAGTCACCGCCGCCGTCAAGGAAGAGCAAGAAGATATAAAGGCGGCGGATGGTGATGAGGAGAAAACAGAAGGAAAAGATGATAGTGCAATTACTGATG ATCAGAAAGAAGCCGCCGATCCCGAGGAAACTGCAGCAGAGACTACTACTCCTGATGCTGATCATGCTGAGGTGGCGGAGGAGGAAGCAAGCAACGTGGA TGTGGGCCCCAAGCCTCATGCCATGGTGGCAGTACCGGAGGCTGCTGATGTGGAAGAGAAGAAGGCCGAGTAA
AA sequence Show only first row Show all	>Lus10001731 pacid=23170791 polypeptide=Lus10001731 locus=Lus10001731.g ID=Lus10001731.BGIv1.0 annot-version=v1.0 MAAVEVVSAQTAFQEEKPDDVITQSAKAAPAPAIVAEESETAPPATDEPKEKVEDENTAASTDEGDVAPAAEKVEVEIVVVEIEKAECDVAPPMVAGEGG EVTAAVKEEQEDIKAADGDEEKTEGKDDSAITDDQKEAADPEETAAETTTPDADHAEVAEEEASNVDVGPKPHAMVAVPEAADVEEKKAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001731 [exp]	0	1
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	11.2	0.8443
					Lus10008409 [exp]	14.3	0.8339
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10033231 [exp]	15.2	0.8279
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	16.1	0.8438
AT5G65630		GTE7	global transcription factor gr...		Lus10010525 [exp]	16.6	0.7288
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	18.1	0.8311
AT3G06530			ARM repeat superfamily protein...		Lus10026144 [exp]	21.4	0.8155
					Lus10030762 [exp]	25.8	0.8116
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10030374 [exp]	26.1	0.7490
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	26.6	0.7934

Compare expression of checked genes

Lus10001731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.