Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07880 310 / 6e-108 SCN1 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) AT1G62450 281 / 2e-96 Immunoglobulin E-set superfamily protein (.1) AT1G12070 269 / 8e-92 Immunoglobulin E-set superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002272 [exp] 445 / 2e-161 AT3G07880 309 / 1e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10006400 [exp] 369 / 4e-131 AT3G07880 313 / 1e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10012352 [exp] 351 / 6e-124 AT3G07880 308 / 6e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10003794 [exp] 310 / 3e-108 AT3G07880 306 / 2e-106 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10027327 [exp] 302 / 6e-105 AT3G07880 303 / 2e-105 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10039029 [exp] 297 / 7e-103 AT3G07880 300 / 5e-104 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10010491 [exp] 278 / 2e-94 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223200 [exp] 333 / 7e-117 AT3G07880 328 / 2e-114 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.014G163000 [exp] 325 / 2e-113 AT3G07880 329 / 7e-115 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.016G013700 [exp] 316 / 1e-109 AT3G07880 314 / 5e-109 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.006G010500 [exp] 311 / 5e-108 AT3G07880 317 / 5e-110 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G234600 [exp] 256 / 3e-86 AT3G07880 212 / 5e-69 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G259200 [exp] 194 / 6e-62 AT3G07880 184 / 4e-58 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF02115 [flax] [poplar] Rho_GDI RHO protein GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Lus10001732 pacid=23170785 polypeptide=Lus10001732 locus=Lus10001732.g ID=Lus10001732.BGIv1.0 annot-version=v1.0 ATGTCAAGCTCGAGTAACATGGGGTTGGATGAGAACACGAAGGAAGGGAGCAGTGAAGAGATTGAGAGGAATAAGGAAAGTGGAGATGAAATTACAAAGC ACATGAGCCATGCTTCTTTGGATGATGATGACGATGATGAGGAAGCAGCCCACAAGATTGAGCTTGGTCCTCAGCAGACTCTCAAGGAACAGCTCGAGAA GGATAAGGATGATGAGAGCTTGAGGAAGTGGAAGGAACAGCTCCTTGGAACCGTGGATTATGACACCATTGGAGAAACTCTCGAGCCTGAAGTGAAGATT CTGAGCCTATCAATTGTGTCTCCTGATAGAGATGATATAGTGCTGTCTATCCCAGAAGATGGGAAGCCTAAGGGGTCATGGTTTACTTTGAAAGAAGGCA GTCCTTACAAGCTCAAGTTTGACTTCCAAGTTAGCAATAACATTGTCTCTGGCCTCAAGTACACCAACACTGTCTGGAAAACTGGTGTCAAGGTTGATGG GACAAAGGAGATGCTTGGAACTTTCAGCCCTCAGCCGGAGGCTTACAGTCATGAGATGGCAGAAGAGGTGACTCCCTCAGGCATGTTTGCCAGGGGATCA TATTCAGCGAGATCAAAGTTTGTCGACGATGATAACAAATGCTACTTGGAGATCAACTACACATTCGACATCCGGAAAGAATGGGCAGCCACTGCATGA
AA sequence Show only first row Show all	>Lus10001732 pacid=23170785 polypeptide=Lus10001732 locus=Lus10001732.g ID=Lus10001732.BGIv1.0 annot-version=v1.0 MSSSSNMGLDENTKEGSSEEIERNKESGDEITKHMSHASLDDDDDDEEAAHKIELGPQQTLKEQLEKDKDDESLRKWKEQLLGTVDYDTIGETLEPEVKI LSLSIVSPDRDDIVLSIPEDGKPKGSWFTLKEGSPYKLKFDFQVSNNIVSGLKYTNTVWKTGVKVDGTKEMLGTFSPQPEAYSHEMAEEVTPSGMFARGS YSARSKFVDDDNKCYLEINYTFDIRKEWAATA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10001732 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	6.2	0.9127
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	8.5	0.8817
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	9.6	0.9047
AT5G24070			Peroxidase superfamily protein...		Lus10004804 [exp]	9.7	0.8879
AT3G05390			unknown protein		Lus10004494 [exp]	11.3	0.8902
AT1G08220			unknown protein		Lus10005355 [exp]	12.2	0.8713
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	18.0	0.8996
AT5G17250			Alkaline-phosphatase-like fami...		Lus10006806 [exp]	21.6	0.8686
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021936 [exp]	22.2	0.8862
AT1G13620		RGF2	root meristem growth factor 2,...		Lus10019202 [exp]	22.8	0.8423

Compare expression of checked genes

Lus10001732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.