Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04780 207 / 1e-66 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT5G60490 89 / 4e-21 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G03170 86 / 6e-20 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT2G20520 86 / 9e-20 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT5G44130 83 / 8e-19 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 83 / 1e-18 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT3G46550 74 / 5e-15 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT3G60900 69 / 3e-13 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 64 / 1e-11 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT4G12730 56 / 1e-08 FLA2 FASCICLIN-like arabinogalactan 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002273 [exp] 347 / 3e-121 AT2G04780 233 / 2e-76 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10012351 [exp] 242 / 6e-80 AT2G04780 223 / 9e-73 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10006399 [exp] 241 / 1e-79 AT2G04780 226 / 9e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10033651 [exp] 92 / 4e-22 AT2G20520 234 / 2e-77 FASCICLIN-like arabinogalactan 6 (.1) Lus10017696 [exp] 89 / 5e-21 AT2G20520 244 / 2e-81 FASCICLIN-like arabinogalactan 6 (.1) Lus10002978 [exp] 87 / 3e-20 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 86 / 1e-19 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 85 / 5e-19 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 79 / 3e-17 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223300 [exp] 216 / 4e-70 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.014G162900 [exp] 215 / 1e-69 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.013G120600 [exp] 97 / 7e-24 AT5G44130 182 / 3e-57 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.001G320800 [exp] 92 / 4e-22 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G129400 [exp] 89 / 4e-21 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.016G088700 [exp] 89 / 5e-21 AT5G03170 203 / 2e-65 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.006G129200 [exp] 89 / 8e-21 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.012G127900 [exp] 89 / 8e-21 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G015032 [exp] 88 / 2e-20 AT5G60490 179 / 2e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G014966 [exp] 88 / 2e-20 AT5G60490 179 / 1e-55 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10001733 pacid=23170792 polypeptide=Lus10001733 locus=Lus10001733.g ID=Lus10001733.BGIv1.0 annot-version=v1.0 ATGGAGTTCTTCTCCACCACCACAGTGCTGCTAATCCTTGTAGCTTCTCTTAGTGAAGCCGCTCACCACAGTCCACCAGCTCCAATGGCGTTCACACCAT CACCAGCTCCAGCTCCTGCATCACCCTATGTGAACCTCACAGACTTGCTCTCAGTAGCAGGACCTTTCCACACATTCCTAGACTACCTCCAATCGACCAA AGTAATCGACACATTCCAGGACCAGGCCAACAAAACCCACCAAGGAATCACCCTATTTGTCCCCAAAGATTCGGCCTTTTCGGCCCTAAGCAAGCCTCCA TACCCTTCACTGTCCAATGTCACTTCAGCACAGCTGAAGCAAGTGATGCTGTTCCATGCATTGCCACATTTCTACACTTTTGCTGACTTCAAGAACCTCA GCGAGTCCGGTCCGGCTCCTACATTTGCAGGAGCTGGACGGTTTGCTCTGAACTTCACCTATCTGTCTGGACTGGTTCGGATCGATTCGGGTTGGAGCAA GACTAAAGTTAGCAGCAGTGTGCACTCCACTGACCCTGTTGCTGTGTACCAAGTTGATAAGGTTCTGTTACCTGAGGCTGTTTTTGGGACTGATATCCCT CCAATGCCTGCTCCTGCTCCGGCTCCCGAGACAACTGTTTCTCCGGCTGCTGCGGATGCTCCCTCTGCCGATGCTACTGCTGCTTTGGGAGGGAAAAATC CTGGGAGGAAAGCTGCATCAAGTTCTGGTAATGGGGTTCATGCTCATGGGTTTGGGGTGGTGTTGGGTTTTTGTGGTGTAGTTATGTTGTTGTTGTGA
AA sequence Show only first row Show all	>Lus10001733 pacid=23170792 polypeptide=Lus10001733 locus=Lus10001733.g ID=Lus10001733.BGIv1.0 annot-version=v1.0 MEFFSTTTVLLILVASLSEAAHHSPPAPMAFTPSPAPAPASPYVNLTDLLSVAGPFHTFLDYLQSTKVIDTFQDQANKTHQGITLFVPKDSAFSALSKPP YPSLSNVTSAQLKQVMLFHALPHFYTFADFKNLSESGPAPTFAGAGRFALNFTYLSGLVRIDSGWSKTKVSSSVHSTDPVAVYQVDKVLLPEAVFGTDIP PMPAPAPAPETTVSPAAADAPSADATAALGGKNPGRKAASSSGNGVHAHGFGVVLGFCGVVMLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	0	1
AT5G27490			Integral membrane Yip1 family ...		Lus10029935 [exp]	1.4	0.9284
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	1.4	0.9381
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10030758 [exp]	3.0	0.9265
AT2G46000			unknown protein		Lus10018829 [exp]	4.5	0.9100
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	4.9	0.9108
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	5.3	0.9235
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10035579 [exp]	7.3	0.9171
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10030690 [exp]	7.3	0.9108
AT2G34590			Transketolase family protein (...		Lus10038505 [exp]	8.1	0.8844
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Lus10013389 [exp]	8.8	0.8802

Compare expression of checked genes

Lus10001733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.