Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47530 409 / 6e-142 Auxin-responsive family protein (.1) AT5G35735 408 / 3e-141 Auxin-responsive family protein (.1) AT4G17280 392 / 7e-135 Auxin-responsive family protein (.1) AT3G25290 366 / 7e-125 Auxin-responsive family protein (.1.2) AT4G12980 347 / 2e-117 Auxin-responsive family protein (.1) AT3G59070 282 / 3e-91 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 199 / 9e-60 Auxin-responsive family protein (.1) AT5G48750 179 / 5e-54 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 131 / 1e-34 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07390 107 / 1e-26 AIR12 Auxin-Induced in Root cultures 12, auxin-responsive family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002274 [exp] 691 / 0 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10012350 [exp] 605 / 0 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10017564 [exp] 366 / 1e-124 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 358 / 2e-121 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10006398 [exp] 334 / 9e-114 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10025877 [exp] 281 / 1e-92 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10038225 [exp] 235 / 6e-76 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10001162 [exp] 221 / 3e-68 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 218 / 7e-67 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162000 [exp] 447 / 1e-156 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 444 / 2e-155 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 432 / 1e-150 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 421 / 3e-146 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 420 / 6e-146 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 400 / 3e-138 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 356 / 6e-121 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.001G031600 [exp] 324 / 2e-108 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 319 / 1e-106 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 318 / 7e-106 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561 CL0328 [flax] [poplar] PF04526 [flax] [poplar] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Lus10001734 pacid=23170804 polypeptide=Lus10001734 locus=Lus10001734.g ID=Lus10001734.BGIv1.0 annot-version=v1.0 ATGGATAAGCTTCACAGAACACTAGCCCTCACCGCGATTCTCATCCTCTCCTTGTTTTCTTCTCAATCCAATGCCCAGACGTGCAACAGACAAACCTTCT CAGCCAACCTGGTCTACTCAACCTGCGTAGATCTCCCAGCTCTAACCTCATTCCTCCACTGGAACTTCCACCAATCCAACAACACAGCGGACATAGCCTT CAGAAGAACCGGAACCACTTCTTCCAGATGGGTTTGCTGGGCTCTGAATCCGTCCGGCGCGGGGATGGTCGGCTCGCAGGCGTTGATCGCCTATCAGCTT CCCAATGGTTCGATGAATGTTTACACGAGCAGCATTGATTCCATGGGCCCGTCCATGGCTCCAGGGGGGTTGAGCTTCCGTGTGACGAATCTTAGAGCTG AGCATTCGAGTGGGGAGACGTCGATTTTCGCTACTTTGCATTTGGATGCGAATCTGCTGTCGACGAATCAGGTTTGGCAAGAAGGTCCACTGGCTGATGG AGGTCCTTCCATTCATCCCACTAGTGGGGATAATCTTAGATCGGTTGGGACTATTGATTTCCAGACTGGTGCCACTTCTGGTGGTGGTGATGGTGCTAGC AACTCAAGGCTCCGCAAGAGGAATATTCATGGAATATTAAATGCAGTGAGTTGGGGGATTCTGATGCCAATAGGAGCCATAATAGCAAGGTACTTGAAAG TGTTCAAGTCAGCAAACCCAGCATGGTTCCACCTCCATGTGGCTTGCCAATTGTCTGCCTATATACTCGGTGTAGCCGGCTGGGGAACCGGTCTCAAACT CGGCAGTGAAAGCGCCGGAATCCAGTACATCAAGCATAAGAACATTGGCATCACCCTCTTCTGCTTTGGCACACTTCAGGCGTTTGCCTTGCTGTTGAGG CCAAAGCCAGACCACAAGTACAGAGTATACTGGAACATGTACCACCACTCCATCGGGTACGCGACCATTAGCTTGAGCATTGCCAACATTTTCGTGGGGC TCGACATCCTCGACCCTGCGAAGAAGTGGAAGAGAGCTTACACTGCTGTCATCATTGTGCTGGGAGCCATTGCTCTGGTTTTGGAAGCTGTGACGTGGCT CATTGTCATCAAGAGGAAGCAGGCTGTTACATCTGCTGATAAGCATGGCAATGGAGGAGGAGGAACCAATGGACATGACCATAGGACACATCAAAATGCC TAA
AA sequence Show only first row Show all	>Lus10001734 pacid=23170804 polypeptide=Lus10001734 locus=Lus10001734.g ID=Lus10001734.BGIv1.0 annot-version=v1.0 MDKLHRTLALTAILILSLFSSQSNAQTCNRQTFSANLVYSTCVDLPALTSFLHWNFHQSNNTADIAFRRTGTTSSRWVCWALNPSGAGMVGSQALIAYQL PNGSMNVYTSSIDSMGPSMAPGGLSFRVTNLRAEHSSGETSIFATLHLDANLLSTNQVWQEGPLADGGPSIHPTSGDNLRSVGTIDFQTGATSGGGDGAS NSRLRKRNIHGILNAVSWGILMPIGAIIARYLKVFKSANPAWFHLHVACQLSAYILGVAGWGTGLKLGSESAGIQYIKHKNIGITLFCFGTLQAFALLLR PKPDHKYRVYWNMYHHSIGYATISLSIANIFVGLDILDPAKKWKRAYTAVIIVLGAIALVLEAVTWLIVIKRKQAVTSADKHGNGGGGTNGHDHRTHQNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47530			Auxin-responsive family protei...		Lus10001734 [exp]	0	1
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10040085 [exp]	4.6	0.8161
AT1G13940			Plant protein of unknown funct...		Lus10034722 [exp]	11.8	0.7630
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10010152 [exp]	13.0	0.7750
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	13.3	0.7908
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	29.8	0.7640
AT1G75580			SAUR-like auxin-responsive pro...		Lus10034511 [exp]	30.4	0.7440
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	38.1	0.7700
AT3G50390			Transducin/WD40 repeat-like su...		Lus10022475 [exp]	39.2	0.7192
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Lus10023673 [exp]	44.0	0.7363
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10006196 [exp]	46.7	0.7232

Compare expression of checked genes

Lus10001734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.