Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008481 [exp] 42 / 5e-05 AT5G11760 56 / 4e-10 unknown protein Lus10002182 [exp] 0 / 1 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1) Lus10039900 [exp] 0 / 1 AT5G55490 575 / 0.0 gamete expressed protein 1 (.1) Lus10029726 [exp] 0 / 1 AT5G55490 572 / 0.0 gamete expressed protein 1 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001735 pacid=23170796 polypeptide=Lus10001735 locus=Lus10001735.g ID=Lus10001735.BGIv1.0 annot-version=v1.0 ATGGACTCAAGTGCTAGTTTGGTGGCTAAATCAGTGAGGAATGATAGCATGATTCTCAAACCCCACATTGTACTAACCGGATCGGTCCGGTCAAAGTTCA GAAACCTACGTAAACTACAACAAGTAACTACAGAACATTGTTCAGAAGATCAGAAACAACAATCGAAAGGACAACGTGGAGTACCTCCACCACCCTCAGA TTTAGCCATACCCAATTCTTCCTCTGGACTATGCAGTATTGAATCATCACATGATCCTGACATTGACGGAGAAAATCAATTCGATGCAAGGAGATGTCAT AGGATAGCGATAGTGAAGTGGACTGCTCAACATGGGTTGAATAAAAAGTTACCGGAAGAAGTCACCAGTTCGGAGGATCCGGATTACACGATTCCAGAAG AAACTGCTGCCGGCCGGCGACGAGAAAGAACGATCTCTGTCGACGAAACCGTTTCAGCTGAGGATGTTTATTAG
AA sequence Show only first row Show all	>Lus10001735 pacid=23170796 polypeptide=Lus10001735 locus=Lus10001735.g ID=Lus10001735.BGIv1.0 annot-version=v1.0 MDSSASLVAKSVRNDSMILKPHIVLTGSVRSKFRNLRKLQQVTTEHCSEDQKQQSKGQRGVPPPPSDLAIPNSSSGLCSIESSHDPDIDGENQFDARRCH RIAIVKWTAQHGLNKKLPEEVTSSEDPDYTIPEETAAGRRRERTISVDETVSAEDVY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001735 [exp]	0	1
AT3G07570			Cytochrome b561/ferric reducta...		Lus10001180 [exp]	42.3	0.7640
AT5G05450			P-loop containing nucleoside t...		Lus10040952 [exp]	45.2	0.7954
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10038763 [exp]	57.8	0.7894
AT5G55950			Nucleotide/sugar transporter f...		Lus10016648 [exp]	59.5	0.7884
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	83.1	0.7712
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10021800 [exp]	87.5	0.7633
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10024191 [exp]	111.4	0.7296
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	146.6	0.7346
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	158.8	0.7344
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	188.4	0.7232

Compare expression of checked genes

Lus10001735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.