Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04865 581 / 0 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 385 / 6e-126 Aminotransferase-like, plant mobile domain family protein (.1) AT1G17930 332 / 5e-106 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 171 / 6e-44 hydrolases;protein serine/threonine phosphatases (.1) AT1G51538 58 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT4G16050 54 / 2e-07 Aminotransferase-like, plant mobile domain family protein (.1) AT5G18510 47 / 7e-05 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50790 47 / 8e-05 Plant mobile domain protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001163 [exp] 355 / 3e-117 AT2G04865 347 / 3e-115 Aminotransferase-like, plant mobile domain family protein (.1) Lus10006393 [exp] 351 / 8e-113 AT2G04865 331 / 5e-106 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012346 [exp] 339 / 2e-108 AT2G04865 347 / 1e-112 Aminotransferase-like, plant mobile domain family protein (.1) Lus10007358 [exp] 216 / 3e-62 AT2G04865 259 / 2e-79 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 97 / 1e-20 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020970 [exp] 88 / 4e-18 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008761 [exp] 70 / 2e-12 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10014633 [exp] 62 / 6e-11 AT2G04865 61 / 2e-11 Aminotransferase-like, plant mobile domain family protein (.1) Lus10032799 [exp] 56 / 4e-09 AT2G04865 64 / 6e-13 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091800 [exp] 47 / 6e-05 AT5G37930 81 / 4e-16 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10001737 pacid=23170801 polypeptide=Lus10001737 locus=Lus10001737.g ID=Lus10001737.BGIv1.0 annot-version=v1.0 ATGGACCTTAGTCCTGGACCAGTCGATGCCTCTGTGCTGTATGAACAGGACAAGCATGTCTCTGCAGCTGTATGGGATGGCCAGGAGCGTGGTGCCCTTA GATGCCATGAACATACATCAAAGTTGGGGGAATGGAGGTTGACTCAAAAGCAGATAGAGTTGGTAGAGACATCAGGCTTCGGGTACTTGAGGAAGATTCC CGCCATTAGTCTAGACAACCCTCTCATCTCAGCACTAGTCGAGAGGTGGCGGAAAGAAACTAATACCTTCCACTTCACCGTTGGTGAAATGTCGGTGACC CTTCAAGATGCGGCACTGCTGCTCGGACTTGCAATTGACGGGAAGCCAGTTATAGGCGTAACGCATACTACCTGTGCGACAGTCTGTGAAAGACTTATAG GAAAAGCACCAGACTCCAATTATGCTAGTGGCGGGATGGTGAAACTAAGTTGGTTAAAGGAGTTCTTTTCTCAGTGTTCCGAAGATTCGTCTGATGAAGA GGTTGAACAATGCACTCGGGCTTATCTTCTATACCTTGTAGGGAGTACGATTTTCTCCACTACCACGGGTAATAAAGTCCCTGTTATGTACCTCCCATTG TTCGAAAACTTGGAAGAATGCGGACAATATGCTTGGGGGGCTGCAGCGTTGGCCTTTCTATACCGGGCACTTGGGAATGCATGCGTTAAATCCCAAAGTA CCGTCTGTGGGTGCTTGACACTTCTGCAGGTAGAGTGGAATCCATACAAGTATATGGACACGACATCGATACCAGAGACCATCCAAGAGACTCTACTTCT GGGAAGATCAAAGACAATGCTGCTATGCTTTGACAAGGCCGAGAGACACCTACCTGATCGGTGCTTGAGGCAGTACGGCATGTGTCAACCTATCCCAGAA GATGTGCCCCGATGGGTGAGAAAGAGTCGAGGAGTTGATGGCGGGGTAGACTTGTCTGGTAAAATGGAGTCCGAGCTTAGTGAATGGGCTGGTCGCTATC TCCATATCATGGAAGGCATTGATGCTATGGATGAAACTGCATCCGCTGAATATATGCAATGGTACTTAAAGATCACGAGGAAAGTAGTCGGGAGACCTAT CTCGCTGTCAACTGAATTTCAGAGAACAATTGCTGGATTAAGAGAGATAGCTTACTTAGCAGATTCGTTTTCGACACAGGGGTTGGACGGACAACAGTTT GAGTCAATTTCGAGGATTAGATATATTGTACAGGACTGTTTGAGGGACAAGTCAGCAAGTCCAGCTGCTGCTACTGCCGTAACGGTTGAGACCCCACCCG CGGAACTTGGGAAAAGGATAAGGGGGAAGGAGAGGGTCAGACGGAAGGGTAGTGGGAAACGCCGGAGAAAAGATGAGCAAATAGAGTATCAGGAGGGCGG TAGTGAGGATGAATCGTCTCAGTTCTATGTCGGAGTAGAGGTTGATCCATTACATGTAATCCCTACAGGTATTGAGGTTACTGCTTCTGAGATGGATGTT GATGCTCAGCTTTTATCTCGTTTGACTGGCGAAGGTGAATATAAGGTTATCGATGGACATGATTGTTACGGTAATGATGACTTTAAGGTGTCACAGACTT GTGAAGTAAACAATGGCGTTCAATCTTCTTCTTCTCATGTCGCAACTTTTGAGTTTGATGACTCCAAGCCTGATGATGCTGCACATAAGCAGTTGACCGA GTCAAACCCCCTCTTTGTTGAAGCTAATGAGACTGGTAATGAGGTTGAGAACTCACAGTTACATGATGCTGTTGATGAAGTCACTGTGGCAAAGCTGTTT GATGGTAGTAAAGGTTCTTATGATGATGATGATGCACAGCTTGCTGATGCAACTACTACAACGGCCTGCGACTCGAAGCTTACTGGTGAAAGTGAAGTTG CTATTGACAGTGCGTCGCAACTTCTTGATGCAACTCAAGTGGCTAACGAGTCGCAGCCAATTGGATATGGGAACGATTCGCATCCTCCTGATTCGAAAGC GGAGGCTGATATTCAGGTGCATGTTTCTGATGCAACTAATGGAGAAAAGGTTAATGACTTGCATGTTTCTGAAGAAAGGAAAAGCCAAAATGACCCGCTG CATCATCCAATGGAAGACGATAGAGATTCTCAGATTCCTGTTGCAGCTAATGATTCCAGTGATTCAAAGGTCGAAACTTCAGCTCTAGAAACTGTTAAGG AGTCCACAAACTAA
AA sequence Show only first row Show all	>Lus10001737 pacid=23170801 polypeptide=Lus10001737 locus=Lus10001737.g ID=Lus10001737.BGIv1.0 annot-version=v1.0 MDLSPGPVDASVLYEQDKHVSAAVWDGQERGALRCHEHTSKLGEWRLTQKQIELVETSGFGYLRKIPAISLDNPLISALVERWRKETNTFHFTVGEMSVT LQDAALLLGLAIDGKPVIGVTHTTCATVCERLIGKAPDSNYASGGMVKLSWLKEFFSQCSEDSSDEEVEQCTRAYLLYLVGSTIFSTTTGNKVPVMYLPL FENLEECGQYAWGAAALAFLYRALGNACVKSQSTVCGCLTLLQVEWNPYKYMDTTSIPETIQETLLLGRSKTMLLCFDKAERHLPDRCLRQYGMCQPIPE DVPRWVRKSRGVDGGVDLSGKMESELSEWAGRYLHIMEGIDAMDETASAEYMQWYLKITRKVVGRPISLSTEFQRTIAGLREIAYLADSFSTQGLDGQQF ESISRIRYIVQDCLRDKSASPAAATAVTVETPPAELGKRIRGKERVRRKGSGKRRRKDEQIEYQEGGSEDESSQFYVGVEVDPLHVIPTGIEVTASEMDV DAQLLSRLTGEGEYKVIDGHDCYGNDDFKVSQTCEVNNGVQSSSSHVATFEFDDSKPDDAAHKQLTESNPLFVEANETGNEVENSQLHDAVDEVTVAKLF DGSKGSYDDDDAQLADATTTTACDSKLTGESEVAIDSASQLLDATQVANESQPIGYGNDSHPPDSKAEADIQVHVSDATNGEKVNDLHVSEERKSQNDPL HHPMEDDRDSQIPVAANDSSDSKVETSALETVKESTN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04865			Aminotransferase-like, plant m...		Lus10001737 [exp]	0	1
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	3.2	0.9360
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	4.5	0.9351
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	10.6	0.9251
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10010024 [exp]	12.6	0.9297
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10001618 [exp]	14.4	0.8997
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001742 [exp]	15.2	0.9246
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018769 [exp]	15.5	0.8871
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	15.6	0.9210
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	16.1	0.9086
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10025046 [exp]	16.3	0.9255

Compare expression of checked genes

Lus10001737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.