Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48130 574 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G67385 214 / 3e-61 Phototropic-responsive NPH3 family protein (.1) AT5G13600 206 / 2e-58 Phototropic-responsive NPH3 family protein (.1) AT1G30440 204 / 3e-57 Phototropic-responsive NPH3 family protein (.1) AT2G47860 200 / 6e-56 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G08660 196 / 7e-55 Phototropic-responsive NPH3 family protein (.1) AT5G48800 196 / 2e-54 Phototropic-responsive NPH3 family protein (.1) AT5G67440 194 / 4e-54 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT4G31820 193 / 7e-54 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT5G10250 192 / 3e-53 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001164 [exp] 1168 / 0 AT5G48130 582 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 219 / 2e-62 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 213 / 3e-60 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 210 / 1e-59 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 210 / 2e-59 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 209 / 3e-59 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 208 / 9e-59 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 202 / 3e-56 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 201 / 4e-56 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164000 [exp] 805 / 0 AT5G48130 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 224 / 2e-64 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G075400 [exp] 214 / 8e-61 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 209 / 3e-59 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 209 / 3e-59 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 208 / 4e-59 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 208 / 6e-59 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 207 / 9e-59 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 207 / 1e-58 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 202 / 3e-56 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10001738 pacid=23170784 polypeptide=Lus10001738 locus=Lus10001738.g ID=Lus10001738.BGIv1.0 annot-version=v1.0 ATGGAAACTGCAAGCTCAAAAGACAGTTCAGTGGCTTCCTCCTCCAGTCCCATCTCTTCATCTCCTAATGTTAGAGCTCTTCTTAAGATCAAGATACTCT CATGGAGCCAAGAGACTGGCTTGCCTGTAACTGTCCGTGTTCGCCTTGGAGAAAGGACACTCAGCCTTCACAAGAATCCCCTTTTCTCAAAGAGTGGATA CTTCAAGAAAAGACTGACGGAAACGACTGAGGTTGAGCTGCCACCGGATTTCCCAGGAGGTCCGGAGACCTTCGAGATTATAGCTCTATTTGCATATGGC TCGTCAACTTCTCCGATAGACCCTTTCAACGTGGCAGCACTGCGCTGTGCAGCAGAGTTTCTGGAGATGAACGAAGAGCACTCCTCCTCGGGGAACAACC TCTGCGAGTGGCTCGATCTCTACTTGAATCAAGTCGTGTTGCAGAACTGGGACAACACTTTGATCGTCCTCCAGAGATGCCACCAGACATTGCTTCCCTG GTGCGAGGAGCTTCTCATAGTCAGCAGGTGCATCGAGTCGTTATCCTTCATGGCGTGTATGGAGATTCTAGATCCGGAGAGGAGGGATCAGATTCAGAAG CCGGAAAGTTCCGATCTTTGGATCAAGGACCTAATTGGTCTTCCATTTGTGTTCTTCACAAGGATTATAGGGTCCCTTAGAAGGCAGGGCATGAAAGAAA AGCATGTCACTCCCATTATTGTGTTCTATGCAAACAAATGGATCATCTCCGAGAAGACTGACTCGAACACGAATGAAAATGTAGGATCCATACTGCAAGG CGTTCTTGATCTTCTGGCCCTCAAAGAAAAATCCAGCAGAGGAGTTCCAGTAGGGTTTTACTTCGGATTGCTGTCGAGATCACTTGAAGTTGGACTCGGA AATGCCAGCAAGGCAAAGTTGCAAGATCAGATTGTGGCTCTCCTGCATTTGGCTCAACTGGAAGACTTTCTCTTCCCTAAGAAAGGATCAGATTCAGATT CAGATTCATCAATCTCTATCATGGAGAAGATCTTTTCGGGATACGTGATGTTCCGCCGCGATGCAAGCCATACTTCCATTGTCACGGAGCTATGGGATTC ATATCTAACACATATAGTATCCGATCCGAAAATGGAGCCTAAGAGGTTTCAAGAGCTGTTAGAAACAGTACCTATTTCTTGGAGACAGAGCCACGATCAA CTTTATCGAGCTATGAACAAGTTCCTCCAGGCGCATCAAGATCTCTCCCAGGACGAAAAGGCAGAAGTCTGCAAGTACCTCAACTGCCAAAGCCTGTCAC AGGAAGCATGTGTCGAAGCAGTTCAAAATGACATGCTGCCTCTGAGATTGATCGTCCAGACTCTATTCGTTCAGCAGCTGAACACCCACCATGCTTTCAA AGATTGCTCGGACTCGTTCAGGTACGCACAATGTGATGGAGACTTCTTCTCCGGAAGCCTAACGACAAGCTCGCGGTGTCCCAAGAGCCAAAATCTGACA GAGAGTCCGTACACTGACGGAGGAGCAGAAACGCTGAATTTCTACTTGCAGAAGGAGCTTACCTCCGAGAGATGGGACGACTTCTCGCGCAAGGAATACG AGTCCACTAACTTCCGGATTCAGAGCCTTGAGCACGAACTTGTGTCACTAAAGAAGAACCTTCAGCTGCAGAAAGGTGACAAGATACAATCTAACAAGCA GCAAAGAGAGTCCTATGGCATGGAAACAAGATCTCTAAGCAAGAAGAGGAACCAAGTTCCAGGATGCGTAAACTCTGTCAATTTCGCTTCACAGAGAAAG TACGCCCGTAAGCTGGTTAAATTTTTCCGAAGGATCAGCTCGTTTGGAACTCGAAAATCAAAACGAAAAACAGCTGCTCAAGATCTGTGA
AA sequence Show only first row Show all	>Lus10001738 pacid=23170784 polypeptide=Lus10001738 locus=Lus10001738.g ID=Lus10001738.BGIv1.0 annot-version=v1.0 METASSKDSSVASSSSPISSSPNVRALLKIKILSWSQETGLPVTVRVRLGERTLSLHKNPLFSKSGYFKKRLTETTEVELPPDFPGGPETFEIIALFAYG SSTSPIDPFNVAALRCAAEFLEMNEEHSSSGNNLCEWLDLYLNQVVLQNWDNTLIVLQRCHQTLLPWCEELLIVSRCIESLSFMACMEILDPERRDQIQK PESSDLWIKDLIGLPFVFFTRIIGSLRRQGMKEKHVTPIIVFYANKWIISEKTDSNTNENVGSILQGVLDLLALKEKSSRGVPVGFYFGLLSRSLEVGLG NASKAKLQDQIVALLHLAQLEDFLFPKKGSDSDSDSSISIMEKIFSGYVMFRRDASHTSIVTELWDSYLTHIVSDPKMEPKRFQELLETVPISWRQSHDQ LYRAMNKFLQAHQDLSQDEKAEVCKYLNCQSLSQEACVEAVQNDMLPLRLIVQTLFVQQLNTHHAFKDCSDSFRYAQCDGDFFSGSLTTSSRCPKSQNLT ESPYTDGGAETLNFYLQKELTSERWDDFSRKEYESTNFRIQSLEHELVSLKKNLQLQKGDKIQSNKQQRESYGMETRSLSKKRNQVPGCVNSVNFASQRK YARKLVKFFRRISSFGTRKSKRKTAAQDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001738 [exp]	0	1
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030916 [exp]	8.9	0.8531
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10040894 [exp]	10.1	0.8233
AT3G19200			unknown protein		Lus10014046 [exp]	12.4	0.8402
AT3G26610			Pectin lyase-like superfamily ...		Lus10029121 [exp]	12.7	0.7760
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032743 [exp]	14.6	0.8691
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001164 [exp]	19.0	0.8366
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10005964 [exp]	23.7	0.8178
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10042918 [exp]	87.5	0.7750
AT5G65660			hydroxyproline-rich glycoprote...		Lus10028221 [exp]	90.3	0.8133
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030599 [exp]	111.1	0.8086

Compare expression of checked genes

Lus10001738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.