Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55560 457 / 1e-163 Protein kinase superfamily protein (.1) AT3G48260 376 / 1e-128 WNK3 with no lysine (K) kinase 3 (.1) AT3G04910 353 / 2e-117 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT5G28080 341 / 2e-115 WNK9 Protein kinase superfamily protein (.1.2) AT3G18750 343 / 3e-115 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT3G22420 341 / 2e-114 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT1G49160 337 / 4e-113 WNK7 Protein kinase superfamily protein (.1.2) AT5G58350 330 / 7e-110 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT5G41990 328 / 2e-109 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT3G51630 327 / 6e-109 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001165 [exp] 606 / 0 AT5G55560 458 / 5e-164 Protein kinase superfamily protein (.1) Lus10016594 [exp] 446 / 1e-159 AT5G55560 465 / 8e-167 Protein kinase superfamily protein (.1) Lus10041947 [exp] 355 / 1e-119 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017318 [exp] 350 / 8e-118 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10020236 [exp] 351 / 1e-116 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 349 / 5e-116 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10017957 [exp] 357 / 8e-116 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10010547 [exp] 344 / 2e-114 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 344 / 3e-114 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164100 [exp] 523 / 0 AT5G55560 466 / 5e-167 Protein kinase superfamily protein (.1) Potri.015G084600 [exp] 365 / 2e-123 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.012G086700 [exp] 360 / 1e-121 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.013G036300 [exp] 353 / 3e-117 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 353 / 5e-117 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 351 / 3e-116 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 338 / 2e-111 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.016G134600 [exp] 334 / 4e-111 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.005G057300 [exp] 334 / 1e-110 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G155100 [exp] 329 / 2e-109 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001739 pacid=23170803 polypeptide=Lus10001739 locus=Lus10001739.g ID=Lus10001739.BGIv1.0 annot-version=v1.0 ATGCCGGCAGTTGGACCGAACTCGTCTGGAAGAGACGCGGAGCAGTTTATGGAGGTGGATCCTTCAGGAAGATTTGGGAGATATGACGACTTACTAGGAG CAGGAGCTGTGAAGAGAGTATACAGGGCGTTTGATCAAGAGGAAGGAATTGAGGTTGCATGGAATCAGGTCAGGTTGCGGAACTTCATTGAGGATCCAGT ACTGATCAACCGGCTTCACTCTGAGGTGAAGCTGCTAAGGGCGTTGAAGAATAAGTACATCATTGTTTGTTACAGTGTCTGGTTGGATGAGAAGCATACC AACCTGAATTTCATCACGGAGATATGCACTTCTGGGAACTTGAGGAATTACAGGAAGAAGCATCGGCATGTGTCGTTGAAGGCACTGAAGAAGTGGTCGA AGCAGGTTCTTGAAGGGTTGGTGTATCTTCACACTCATGAGCCCTGTGTTATCCATAGGGATCTGAATTGCAGTAACATCTTCATCAATGGTAACATTGG CCAGGTGAAGATAGGCGATCTGGGTTTCGCCACGATAGTGGGAAGGAGTCACGTAGCCCATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTT TACGAAGAAGACTACACCGAGCTGGTGGACATCTACTCTTTCGGGATGTGCTTGCTCGAGATGGTAACAATGGAGATCCCATTCAGCGAATGCAACAGCA TTGTCAAGATATACAAGAAGGTAACGACTGGGGTGAAGCCACAAGCCTTGAGCAAGGTGGAGGATCCAGAAGTGAAGGCTTTCATCGAGAAGTGCATTGG TGAGCCAAAGGCTCGGCCTTCAGCATCAGACCTTCTTCTGGACCCTTTCTATGCCGGAATCGGTGTCGATGAAGACGATGAAACTGCATCCTAA
AA sequence Show only first row Show all	>Lus10001739 pacid=23170803 polypeptide=Lus10001739 locus=Lus10001739.g ID=Lus10001739.BGIv1.0 annot-version=v1.0 MPAVGPNSSGRDAEQFMEVDPSGRFGRYDDLLGAGAVKRVYRAFDQEEGIEVAWNQVRLRNFIEDPVLINRLHSEVKLLRALKNKYIIVCYSVWLDEKHT NLNFITEICTSGNLRNYRKKHRHVSLKALKKWSKQVLEGLVYLHTHEPCVIHRDLNCSNIFINGNIGQVKIGDLGFATIVGRSHVAHSIIGTPEYMAPEL YEEDYTELVDIYSFGMCLLEMVTMEIPFSECNSIVKIYKKVTTGVKPQALSKVEDPEVKAFIEKCIGEPKARPSASDLLLDPFYAGIGVDEDDETAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55560			Protein kinase superfamily pro...		Lus10001739 [exp]	0	1
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	2.8	0.8742
AT5G55560			Protein kinase superfamily pro...		Lus10001165 [exp]	3.6	0.9096
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	4.2	0.8712
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	4.5	0.8637
					Lus10007301 [exp]	10.5	0.8516
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	12.0	0.8576
AT3G29270			RING/U-box superfamily protein...		Lus10030699 [exp]	12.6	0.8354
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10016764 [exp]	14.3	0.8661
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10026856 [exp]	20.2	0.7818
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	25.9	0.8474

Compare expression of checked genes

Lus10001739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.