Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05120 1392 / 0 Nucleoporin, Nup133/Nup155-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001170 [exp] 2529 / 0 AT2G05120 1449 / 0.0 Nucleoporin, Nup133/Nup155-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G221300 [exp] 1727 / 0 AT2G05120 1423 / 0.0 Nucleoporin, Nup133/Nup155-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03177 [flax] [poplar] Nucleoporin_C Non-repetitive/WGA-negative nucleoporin C-terminal CL0186 [flax] [poplar] Beta_propeller PF08801 [flax] [poplar] Nucleoporin_N Nup133 N terminal like
Representative CDS sequence Show only first row Show all	>Lus10001742 pacid=23170789 polypeptide=Lus10001742 locus=Lus10001742.g ID=Lus10001742.BGIv1.0 annot-version=v1.0 ATGTTCTCTCCAGCAGCGAAGAGGTCAACCTTCAGCTCTCGCCGCGACGGAAATCTAGGAAAATCCACACCAGCAGCAGCAACTTCTCCTACCTCTCCCT TCACTCCTCTGCCTGATGACCGCAAGTCAGTCCTCTTCGACAACAATGCAACAGTACCCGACCGACCTGATTCCGGAACTCCAGCACCTTGGGCGCCGCC TCGTCTCTCCGTTCTCGCCAGAATTCCACCAACGGGAAAGGTTGAGAAAGGGAGTCAGGACGATCCAATCAAACCCGTGTATGTTGGAGAATTCCCTCAG GCAGTCCGTGACGAACAAGCGAGATTGTTGCAGAAGCATAATATTGGCGATACACTAGTGTCTGGTGGTATGGATAAACTAACTTGTCTTTCGTGGATTA TTTGTGGGAGTAAAGCCTTTGTCTGGAGTTACTTGTCATCTGCAGCTTCGAAAAAATGCACGGTTCTGGATCTTCCTTCAGACATTCTGCAGTATGGAGA TATTGGTAAAAATTCATATCATGGTAGCAGTTGGTTGTTATATTTTGTTGTCTGGGATAGAACCAACCAAGGAGGCAATAAAGGTCTGCAGGCTAGCGAT TCTGTTGGTATTATAATGTGCAACCAAAAAACTCGAGCTGTTATTTACTGGCCTGAGATTAATGCGGAGGGGAGATCTACCCCCGTTAGTACTTTTGTAC CTTTTGATGAACCTGAGGTCTCTTCTTCCCCTGTTGATGCAAGGACCACAGCTAGTAGACAGCGGCAACGTAGCACGTCTGCAAGTAGTTTAACTAAATT ACATTCACTCAACTCCTTGATTGCTTCTGCTGTACCTGCTTCGAAGCATGTTTGTGTAGCTTTTGCATGTTGTTCCAATGGTGAGCTCTGGCAGTTTACA TGTAGTCCCATTGGTATTGATCATAGGAAAGTGTATCAGAAAGAATGGAGTATGTCCTCCCAGGGTAGTGACAGTGGGCAATTTGTCGGAAGCAAGGGTT ACCCAAGGTCGCTTGTATGGTGCTTCCCTACAACATCCATGGAGGATTCCAGTAGAGAATTTTTTATGCTGACTGATCAAGAGATAAAGTGTTTTAGCGT TACATTTGACGCTGCAGTAAAGGCCTCTGAGATCTGGTCACATGAAATTGTCAGCAGTGATGGCGATTTGGGTATTAAGAAGGATTTAGCTGGACAGAAA CGAATCTGGCCTCTGGATTTACAGGTGGATGAACGTGGCAAAGTGCTAACTGTACTAGTTGCCATTTTCTGCATGGATCGGGTTAGCAGTTCTAGCTACA CTCAATATTCACTTTTGACCATGCAATATAATTCTCAAGTAAGCAGATCTTCTAATTTACATGAGAGAGTATTGGAGAAGACGGCTCCAATCCAGGAGAT TATTCCCAAAGCAAGACTAGAGGAGGAAGATTTGTTGTTCTCCATGAGACTTCGAGTAGGAGGGAAGCCAGCAGGTTCAGCAATCATCCTTTCTGGTGAT GGAACAGCCACGGTATCTCACTACTACCAAAGTAAAACCCGTCTGTATCAATTTGATCTTCCATATGATGCAGGGAAAGTTCTAGATGCATCAGTTCTGC CATCAGCCGATGATGGTGAAGATGGTGCATGGGTTATATTAACAGAGAAAGCAGGAATATGGGTTATACCAGAAAAAGCTGTTGTACTTGGAGGAGTAGA ACCACCTGAGAGAAGCTTGTCGCGTAAAGGGAGCTCAAATGAAAGATCTTCACAGGAAGAAAAGAGAAATGTTGCATTTGCTGGCTCCATTGCTCCTAGA AGGGTTAGCTCTGCAGCGTGGGATGTTGGTGATAGACAAAGGGCTGATATGACTGGAATTGGACGCTCCACTGTGCAAGACGAGGAGTCAGAAGCTTTGC TCGGTCAGATATTCCATGATTTCCTGCTGACTGGGCAGGTGGACAGTTTGGTTGAAAAGCTGCGAAACTCTGGAGCATTTGACAGGGATGGAGAAACCAA CGTCTTCGCTCGGACAAGCAAGTCAATCGTTGATACTTTAGCAAAACATTGGACAACTACCAGGGGTGTTGAGATTGTCTCTATGTCTATTGTTTCCAGC CAACTCATGGATAAGCAGCAAAAGCATGAAAAGTTTCTGCAGTTTCTTGCCTTGTCAAAATGCCATGAAGAACTTTCGTCTAAACAGAGACAATCTTTGC TAACAATCTTGGAGCATGGTGAGAAACTTGATGGAATGGTACACCTGAGAGAATTGCAGAATACAATCAACCAGAACCGTGCAACTGCAGCGAGCATGTT ACCTGGTTCAGAAGTTCAAATTTCAGGTGCTCTTTGGGATCTAATTCAGTTAGTTGGCGAGAGAGCCCGTCGAAATACTGTCCTTCTCATGGACAGGGAC AATGCTGAAGTATTCTTCAGCAAGGTTTCAGATCTTGAAGAGTTATTTCATTGCCTGGACAGACACTTGGTGTACATTTTAAACGAGGACCAGCCACTTG AGGTTCAGATTCAAAGAGCTTCTGAACTTTCAAATGTTATTGTCTCCATTTTTCGGGCAGCTGCTTTCTACAGGGATGAGCACCATTCGTGGTATCCACC TCCTGAAGGGTTAACTCCCTGGAATTGCCAACCTGTAGTGTGGAATGGGATGTGGAGAGTGGCTTCATCCATGGTCCAGTTGTTGAGTGAAATATCCAAG CTTGGGGATTCTGCCAATTCGGATTTCCATGGTCATTTGGAGGGTCTCACGGAAGTTTTACTAGAGGCGTATACTGGTGCTATTGAAGCAAAGCTGGGAC GTGGTGAAGAACACAAGGGGATATCAGAGGAGTATTGGAAAAGAAGGGATTTCCTTCTTGACTCTCTTTATCATCAAGTGAAACATCTTGTGGAGGGGAA CCACCAGATTTTGGCTGTAGAAACAGGTGCCCAACAGATAGAAATGCTCAGGAAGCTTTCTTCAAGCTTGTTGTCAATTGCTAAAAGGCACGAAGCTTAT AACATCATGTGGAGTATTTGCTGTGATTTTAATGATTCGGAGTTGCTGAAAAAACTCTTGCACGAGAGTATGGGACCAAAAGGAGGATTCAGTTATTTTG TGTTCAAACAATTATACGAGAAGAGGCAATTCGCGAAGCTTCTCAGGCTCGGGGAGGAGTTCCAGCAAGAGCTGTCCATCTTTTTAAAAGACCACCAGGA TCTTCTTTGGCTTCATGAGTTGTTTCTTCATCAGTTTTCCTTTGCTTCAGAAGATCTTCATACTTTGGCGCTTTCTCAAGATGAGTGTTCCAGTCCAGAA GACGATGAAGATGCTATGAATGATCACCAGCATCCTGGTACTGGAATAACTGTTGCAGATAGGAAGCGACTTTTGAATCTGTCGAAGATTGCTGCCATGG CAGGTAAAAGCATTGATTATCAGTCCAAATTGAAACGCATCGAGGCAGACTTGAAGATCTTGAAACTGCAGGCAGAGATTATTAAGTTATTACCATCCGC GAAACCAGAGCTGGACGATGAAAACCGGTTATTCCGACCGGAGGAGCTGATCGAGCTCTGCCTTAAATCTGGAACCCGGGACTTGACGCTACATGCATTC AACATCTTTGCACGGACAAGCTCATCCTTTCGCGAAAGCCACAGGAGCCTCTTGGAGGAATGCTGGAAGAACGCAGCCAATCAAGACAACTGGGGAGAGC TACAGAGAGCGCATGATATCGAAGGCTGGAGCGACGAGGAAATGCTGAGGCACCTACGAGAAACGGTGCTCTTCCAGGCATCGAGCCGATGCTATGGCTC CCAAGGAGAGAAGATCGAGGAGGAGTTTGAAGCGGTGTTGCCACTAAGGAAAGACGGCGCAGATTCTTCTAGTCAGGGTGTTGAGGCGGCAGAGTACTCA GTAGAGACACTGCTGATGCAGCACAACGAGTTCCCTGATGCAGGGAAGCTGATGCTGACCGCTGCTGTATTGGGTGGCGTCCAGGAAGATGCCAAAGTAG ACAAGAGTTCTCCCATGGAGTAG
AA sequence Show only first row Show all	>Lus10001742 pacid=23170789 polypeptide=Lus10001742 locus=Lus10001742.g ID=Lus10001742.BGIv1.0 annot-version=v1.0 MFSPAAKRSTFSSRRDGNLGKSTPAAATSPTSPFTPLPDDRKSVLFDNNATVPDRPDSGTPAPWAPPRLSVLARIPPTGKVEKGSQDDPIKPVYVGEFPQ AVRDEQARLLQKHNIGDTLVSGGMDKLTCLSWIICGSKAFVWSYLSSAASKKCTVLDLPSDILQYGDIGKNSYHGSSWLLYFVVWDRTNQGGNKGLQASD SVGIIMCNQKTRAVIYWPEINAEGRSTPVSTFVPFDEPEVSSSPVDARTTASRQRQRSTSASSLTKLHSLNSLIASAVPASKHVCVAFACCSNGELWQFT CSPIGIDHRKVYQKEWSMSSQGSDSGQFVGSKGYPRSLVWCFPTTSMEDSSREFFMLTDQEIKCFSVTFDAAVKASEIWSHEIVSSDGDLGIKKDLAGQK RIWPLDLQVDERGKVLTVLVAIFCMDRVSSSSYTQYSLLTMQYNSQVSRSSNLHERVLEKTAPIQEIIPKARLEEEDLLFSMRLRVGGKPAGSAIILSGD GTATVSHYYQSKTRLYQFDLPYDAGKVLDASVLPSADDGEDGAWVILTEKAGIWVIPEKAVVLGGVEPPERSLSRKGSSNERSSQEEKRNVAFAGSIAPR RVSSAAWDVGDRQRADMTGIGRSTVQDEESEALLGQIFHDFLLTGQVDSLVEKLRNSGAFDRDGETNVFARTSKSIVDTLAKHWTTTRGVEIVSMSIVSS QLMDKQQKHEKFLQFLALSKCHEELSSKQRQSLLTILEHGEKLDGMVHLRELQNTINQNRATAASMLPGSEVQISGALWDLIQLVGERARRNTVLLMDRD NAEVFFSKVSDLEELFHCLDRHLVYILNEDQPLEVQIQRASELSNVIVSIFRAAAFYRDEHHSWYPPPEGLTPWNCQPVVWNGMWRVASSMVQLLSEISK LGDSANSDFHGHLEGLTEVLLEAYTGAIEAKLGRGEEHKGISEEYWKRRDFLLDSLYHQVKHLVEGNHQILAVETGAQQIEMLRKLSSSLLSIAKRHEAY NIMWSICCDFNDSELLKKLLHESMGPKGGFSYFVFKQLYEKRQFAKLLRLGEEFQQELSIFLKDHQDLLWLHELFLHQFSFASEDLHTLALSQDECSSPE DDEDAMNDHQHPGTGITVADRKRLLNLSKIAAMAGKSIDYQSKLKRIEADLKILKLQAEIIKLLPSAKPELDDENRLFRPEELIELCLKSGTRDLTLHAF NIFARTSSSFRESHRSLLEECWKNAANQDNWGELQRAHDIEGWSDEEMLRHLRETVLFQASSRCYGSQGEKIEEEFEAVLPLRKDGADSSSQGVEAAEYS VETLLMQHNEFPDAGKLMLTAAVLGGVQEDAKVDKSSPME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001742 [exp]	0	1
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	5.8	0.9462
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	7.6	0.9459
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	8.5	0.9363
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	8.7	0.9432
AT5G53480			ARM repeat superfamily protein...		Lus10034318 [exp]	8.8	0.9338
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	10.8	0.9406
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	13.7	0.9304
AT5G64420			DNA polymerase V family (.1)		Lus10025659 [exp]	14.1	0.9163
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	15.1	0.9378
AT2G04865			Aminotransferase-like, plant m...		Lus10001737 [exp]	15.2	0.9246

Compare expression of checked genes

Lus10001742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.