Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05230 318 / 1e-101 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 318 / 1e-101 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 196 / 5e-56 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 158 / 2e-43 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT5G53150 162 / 4e-43 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 158 / 2e-42 Domain of unknown function (DUF3444) (.1) AT5G37440 151 / 3e-42 Chaperone DnaJ-domain superfamily protein (.1) AT4G19570 155 / 1e-41 Chaperone DnaJ-domain superfamily protein (.1) AT5G37750 146 / 5e-41 Chaperone DnaJ-domain superfamily protein (.1) AT5G27240 153 / 6e-40 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001171 [exp] 607 / 0 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 447 / 2e-150 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10012334 [exp] 416 / 3e-138 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10008983 [exp] 221 / 7e-65 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 221 / 8e-65 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 216 / 5e-63 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 214 / 2e-62 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 145 / 3e-37 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 145 / 3e-37 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165600 [exp] 533 / 0 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 513 / 3e-177 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 219 / 1e-63 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 213 / 1e-61 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 206 / 1e-58 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 205 / 1e-58 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 205 / 1e-58 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 201 / 7e-57 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 168 / 6e-45 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 163 / 2e-43 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10001744 pacid=23170783 polypeptide=Lus10001744 locus=Lus10001744.g ID=Lus10001744.BGIv1.0 annot-version=v1.0 ATGGAAGCAAATATAGCGGAGGCTATTAGAGCCAAGGATATCGCAGAGAGGAAATTTGCGGAGAAGGATTTTGTCAGCGCCAAGAGTTACGCTTTGAAGG CTAAATCTCTGTGCCCTGGACTAGAAGGCGTGTCTCAGATGGTCTCCACTTTCGAAGTTTACATGGCATCTGAGGTCCGGAGCAACGGCCAAATTGATTA TTATTCAGTACTTGGGTTGAAGCCCACTGCAGACAGAGACGCTGTTAAGAAGCAGTACAGGAAGATGGCTGTGGTGCTTCATCCTGATAAGAACAAAACA GTTGGAGCTGATGGTGCTTTTAAACTTGTATCCGAAGCGTGGACCATGTTATCGGATAGTCTGAAGAGGAGTTCATATGATAGAAACAAGCAATATGCTC CTGGCGTTGTTGGCCAGACAAATTCGTCGTCATTGCATGCTTCTGGTGGCGCTGGTTACACTAACTGCTCCAGTTCATCTGCTCCCCACGGGCTTGATAC TTTCTGGACTGTTTGCACCTCTTGTAAAGTTCAATATGAGTATTTGAGGAAGTACGCGAACAAGCGACTTTCGTGCAAGAACTGCAGAGGTACTTTCATT GCTGTGGAAACAGGGGCAGGTCCAGCAACCGGATCTTTTCCGTATAGTTCGTGGTCTTATGTGCACGGCAATGGTTATGGAAGCCATGGATACGATGGTG TTTCGTATGTCCCTACTAATACTACGTTGTACACAGGAAATGGAGTCTCAGGATTACACACTGCTCATGGGTACGAGTATGCTGCCAATAATGTATCATT TCAGTGGGGATCTTACTCTGGAACTTCTGGTGTCTTAGCTCCTAATGGAACAACTACCGATACTCTTTATCAGAATAATGGAAAAGTCAGTCGCGGGAGG AAGGTTAAACCAGTCTCTAAGGAGAAGCCTTCTCCAAAACCTGCTGTATCTAACGTAAACACGACAACATCACCCAACCAATTTGTAGGCTGCTACCTCA CCAAAGCTGGTAGACCTGACAAGAGAAGGAAGATTGTTTCTGGAGCTAGTTTTAGAAATGGATATGAAAAAAGGGAGCACAAGCCTCCTTCAGAAGTAGT GTTTGGTAATGCACCTGGGGCTGGGAAGGGTGACGTTGAACCTAATAAGCTTCCAAGTCCAGTTGAGCTTATACCTACACGCAGCCCGATTCTGCCTCTT TTCGATGTTAGAAAGTGTTTGATTGCCAGGGCAAGGTCTGAAATCCGGATAAGGTTGGAACAGATGGAACATATGGATGCTGCGAGGAAATCTGCATTCA TTGCTGGTATCCCTAAAGCAGATTCATTGAAGTCCTCGTTGATTACTCGGAGGATGAAGGCGTTTGCATTGCTCCCCTAG
AA sequence Show only first row Show all	>Lus10001744 pacid=23170783 polypeptide=Lus10001744 locus=Lus10001744.g ID=Lus10001744.BGIv1.0 annot-version=v1.0 MEANIAEAIRAKDIAERKFAEKDFVSAKSYALKAKSLCPGLEGVSQMVSTFEVYMASEVRSNGQIDYYSVLGLKPTADRDAVKKQYRKMAVVLHPDKNKT VGADGAFKLVSEAWTMLSDSLKRSSYDRNKQYAPGVVGQTNSSSLHASGGAGYTNCSSSSAPHGLDTFWTVCTSCKVQYEYLRKYANKRLSCKNCRGTFI AVETGAGPATGSFPYSSWSYVHGNGYGSHGYDGVSYVPTNTTLYTGNGVSGLHTAHGYEYAANNVSFQWGSYSGTSGVLAPNGTTTDTLYQNNGKVSRGR KVKPVSKEKPSPKPAVSNVNTTTSPNQFVGCYLTKAGRPDKRRKIVSGASFRNGYEKREHKPPSEVVFGNAPGAGKGDVEPNKLPSPVELIPTRSPILPL FDVRKCLIARARSEIRIRLEQMEHMDAARKSAFIAGIPKADSLKSSLITRRMKAFALLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001744 [exp]	0	1
AT4G32620			Enhancer of polycomb-like tran...		Lus10021959 [exp]	1.4	0.9607
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	2.0	0.9586
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	3.5	0.9507
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Lus10026746 [exp]	4.9	0.9154
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	5.0	0.9397
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	6.0	0.9399
AT1G27850			unknown protein		Lus10006433 [exp]	7.0	0.9313
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	9.4	0.9191
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Lus10042137 [exp]	9.5	0.9202
					Lus10004294 [exp]	10.1	0.9319

Compare expression of checked genes

Lus10001744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.