Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48170 93 / 2e-24 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012335 [exp] 87 / 4e-22 AT5G48170 145 / 6e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10006381 [exp] 85 / 7e-21 AT5G48170 140 / 5e-43 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10001172 [exp] 0 / 1 AT5G48170 164 / 2e-52 SNEEZY, SLEEPY2, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165700 [exp] 112 / 6e-32 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Potri.010G254000 [exp] 40 / 0.0004 AT5G07610 149 / 1e-40 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10001745 pacid=23170793 polypeptide=Lus10001745 locus=Lus10001745.g ID=Lus10001745.BGIv1.0 annot-version=v1.0 ATGCTGCCGGTAATAAACACCTACATCACCAACGTCGAGGTGGATGCTCTGGTAGCTGGAATATTCAGCATCAACGACCACGTGGACATACTCGCGGAGG TCCTCAAGAGGCTAGACGGCCGCTCCCTATGCGTGGCCGCTTTCGTCTGCCGTTTATGGAACAACATCGCCACCAACGCCGTTTGGGAGGATCTCTGCTT GCGCCACGTGTCTCCCCGGCCTCCTTCCAGGGTGAGACCCGTGGTGACAGCACTCGGCGGCTACAAACGACTCTACATGGTGTGTGTCCGTCCCGTGCTG AGTCGACTTGGACGCAGCAGGAAGCGAATATCCGGGTCGGGTGAGCGAGCCAGGCCTTGGGTTTGGACCCCGACGAGGTCCAGCTTTCGTTGTCGTTGTT CTGCGTTGATTACAACGAAAGGCTCGGCGATAGAATCGGTGGGAGCGACGCGTCAGCACCGTTGTCGCTCATGTTCTTGTGCAAGCCCATCAACGTCTGA CTTCTTTATGTTCTTCTAA
AA sequence Show only first row Show all	>Lus10001745 pacid=23170793 polypeptide=Lus10001745 locus=Lus10001745.g ID=Lus10001745.BGIv1.0 annot-version=v1.0 MLPVINTYITNVEVDALVAGIFSINDHVDILAEVLKRLDGRSLCVAAFVCRLWNNIATNAVWEDLCLRHVSPRPPSRVRPVVTALGGYKRLYMVCVRPVL SRLGRSRKRISGSGERARPWVWTPTRSSFRCRCSALITTKGSAIESVGATRQHRCRSCSCASPSTSDFFMFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001745 [exp]	0	1
AT1G27990			unknown protein		Lus10037043 [exp]	1.0	0.9418
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009034 [exp]	3.2	0.7909
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009673 [exp]	5.3	0.7420
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	8.4	0.7254
AT1G80520			Sterile alpha motif (SAM) doma...		Lus10024059 [exp]	8.5	0.7665
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10014711 [exp]	9.8	0.7229
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10025794 [exp]	13.0	0.7187
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035189 [exp]	14.0	0.7205
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	23.7	0.6881
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	26.2	0.6809

Compare expression of checked genes

Lus10001745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.