Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07750 419 / 2e-149 3'-5'-exoribonuclease family protein (.1.2) AT3G12990 101 / 5e-25 RRP45A ribonuclease PH45A (.1.2.3) AT3G60500 100 / 7e-24 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT1G60080 71 / 7e-14 3'-5'-exoribonuclease family protein (.1) AT4G27490 42 / 0.0003 3'-5'-exoribonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001173 [exp] 502 / 0 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2) Lus10012336 [exp] 349 / 2e-121 AT3G07750 340 / 6e-118 3'-5'-exoribonuclease family protein (.1.2) Lus10006382 [exp] 347 / 2e-120 AT3G07750 332 / 1e-114 3'-5'-exoribonuclease family protein (.1.2) Lus10009708 [exp] 100 / 2e-23 AT3G60500 476 / 3e-166 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10036022 [exp] 82 / 3e-17 AT3G60500 439 / 4e-150 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10021789 [exp] 80 / 4e-17 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1) Lus10034605 [exp] 68 / 6e-13 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1) Lus10037395 [exp] 42 / 0.0003 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166200 [exp] 447 / 2e-160 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2) Potri.001G253200 [exp] 107 / 3e-26 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.009G047500 [exp] 106 / 8e-26 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.016G055600 [exp] 71 / 6e-14 AT1G60080 442 / 8e-158 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 44 / 5e-05 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10001747 pacid=23170798 polypeptide=Lus10001747 locus=Lus10001747.g ID=Lus10001747.BGIv1.0 annot-version=v1.0 ATGGTGGGACTTTCAGTTGGAGAGCAGCATTTCATTAAAGGAGGCATTGATCAGAACATCCGTTGTGACGGCCGGAAGAGAGATTCTTACCGCCCCATTT TCGTTGAAACTTGCGTCATTCCTCAGGCAAATGGCTCGGCTCGTATTAGGATGGGAGCTACAGAGGTCATTGCCAGCGTAAAGGCAGAGCTAGGAAGGCC AAGTGCTTTGCATCCTGACAAGGGGAAAGTTTCCATATTTGTGGATTGCAGTGCTGTTGCAGAACCAACATTCGAGGGAAGATGTGGTGAGGAATTGTCA GCAGAACTTTCAGTTACTCTTCAACGTTGCCTCTTAGGTGGCACCAGTGGAGCAGGAACCGGAATCGATCTGACATCGTTGATAGTAGCCGAAGGAAAGA TTTGTTGGGATCTTTACATTGATGGCCTTGTCATTAGTTGTGCCGGTAATCTACTCGATTCACTAGGGGCTGCCATTAAGGCTGCTTTGGCGAATACTGC CATCCCACGAGTGAATGTGTCAGCTGCTGCAGCAGGAGACGAACAGCCGGAGGTGGACATAAGCGACGAAGAGTTCTTGCAGTTTGATACATCTGCAGTC CCTGTGATAATCACTCTAACAAAGGTAGGGAAGCACTACATTGTGGATGCCACATCAGAAGAGGAAGCACAGATGAGCTCAGCTGTTTCTATCTCTGTCA ATAGGAAAGGCCACATCTGTGGGTTAACTAAACGAGGAGGCACAGACCTTGATCCGAGTATTATCTCTGATATGGTCTCTGTGGCACAACACTTGGCCGA ACAGCTGATAATCAAACTGGATTCTGAAATTTCAGCTGCCGAGGCTGAAGAAGACGAATCGTGA
AA sequence Show only first row Show all	>Lus10001747 pacid=23170798 polypeptide=Lus10001747 locus=Lus10001747.g ID=Lus10001747.BGIv1.0 annot-version=v1.0 MVGLSVGEQHFIKGGIDQNIRCDGRKRDSYRPIFVETCVIPQANGSARIRMGATEVIASVKAELGRPSALHPDKGKVSIFVDCSAVAEPTFEGRCGEELS AELSVTLQRCLLGGTSGAGTGIDLTSLIVAEGKICWDLYIDGLVISCAGNLLDSLGAAIKAALANTAIPRVNVSAAAAGDEQPEVDISDEEFLQFDTSAV PVIITLTKVGKHYIVDATSEEEAQMSSAVSISVNRKGHICGLTKRGGTDLDPSIISDMVSVAQHLAEQLIIKLDSEISAAEAEEDES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001747 [exp]	0	1
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10042056 [exp]	2.0	0.7793
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Lus10031967 [exp]	5.2	0.7653
AT3G53140			O-methyltransferase family pro...		Lus10014400 [exp]	5.5	0.7619
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	7.7	0.7642
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10019725 [exp]	20.0	0.6753
AT2G47640			Small nuclear ribonucleoprotei...		Lus10013840 [exp]	20.8	0.7575
AT5G18790			Ribosomal protein L33 family p...		Lus10012786 [exp]	23.1	0.7725
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10009437 [exp]	26.7	0.7375
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	30.5	0.7547
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	33.2	0.7219

Compare expression of checked genes

Lus10001747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.