Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14540 209 / 3e-69 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT5G47640 197 / 3e-64 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT3G53340 186 / 5e-60 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G37060 184 / 3e-59 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT2G38880 180 / 2e-58 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT2G13570 181 / 2e-57 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT2G47810 161 / 1e-50 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT5G47670 161 / 4e-50 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G21970 152 / 5e-46 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT1G09030 140 / 1e-42 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001177 [exp] 244 / 1e-82 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10022514 [exp] 202 / 3e-66 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10016616 [exp] 202 / 3e-66 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10015058 [exp] 183 / 9e-59 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10020899 [exp] 184 / 2e-58 AT2G13570 213 / 9e-70 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10033477 [exp] 181 / 4e-57 AT2G13570 211 / 4e-69 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10023484 [exp] 178 / 4e-57 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10036637 [exp] 174 / 2e-55 AT4G14540 179 / 6e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10035854 [exp] 174 / 6e-55 AT4G14540 181 / 4e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G167800 [exp] 220 / 2e-73 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G006100 [exp] 209 / 7e-69 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 206 / 3e-68 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005500 [exp] 202 / 4e-66 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G083400 [exp] 188 / 2e-60 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G085000 [exp] 187 / 2e-60 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.007G082200 [exp] 186 / 1e-59 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.008G044800 [exp] 184 / 2e-59 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.010G216600 [exp] 183 / 5e-59 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.005G065300 [exp] 178 / 2e-56 AT2G13570 201 / 2e-65 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10001751 pacid=23170800 polypeptide=Lus10001751 locus=Lus10001751.g ID=Lus10001751.BGIv1.0 annot-version=v1.0 ATGGCGGATTCGGACAACGAATCGGGTGGGCACGGCGGGGGAGGACATGGAGAGCTGTCAGCGAGGGAGCAGGACAGGTTCCTGCCGATCGCGAACGTGA GCAGGATAATGAAGAAAGCTTTGCCGGCGAACGCCAAGATATCGAAAGACGCGAAGGAAACAGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATAAC TGGGGAGGCTTCGGACAAGTGCCAGCGGGAGAAGCGGAAGACGATCAATGGCGACGATCTGCTGTGGGCGATGACGACGCTCGGGTTCGAAGAGTATGTG GAACCGTTGAAGGTTTACCTTCAGAAGTACAGGGAGATGGAAGGTGAGAAGTCGCCGATGGGCGGAGGAGGGATGTCGAGGGAGAAGGACGGCGGTGATG GGGCTACCGGCGGTGGAGGGTCAAGCGGAGGAGTGAATTCCGGGGGAGGAATGGGATCATCATCATCAACTGTAGGTGGAGGAGGAGGGATGTACGGTGG GATGATGATGGGGCATCATCAGGGACAGGTGTACGGTTCATCGGGGTTCCAGCATCCACACCAGCAGCATCATCATCATTATCAAATGGGTGTTGGAAAA GGTGGAGCTGGTGGTGGTGCTACTAGCACTACTAGGTAG
AA sequence Show only first row Show all	>Lus10001751 pacid=23170800 polypeptide=Lus10001751 locus=Lus10001751.g ID=Lus10001751.BGIv1.0 annot-version=v1.0 MADSDNESGGHGGGGHGELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYV EPLKVYLQKYREMEGEKSPMGGGGMSREKDGGDGATGGGGSSGGVNSGGGMGSSSSTVGGGGGMYGGMMMGHHQGQVYGSSGFQHPHQQHHHHYQMGVGK GGAGGGATSTTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001751 [exp]	0	1
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001177 [exp]	1.0	0.9387
AT4G23330			unknown protein		Lus10032266 [exp]	3.0	0.8000
					Lus10032068 [exp]	6.6	0.8015
AT1G29530			unknown protein		Lus10015254 [exp]	12.6	0.7733
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10015919 [exp]	16.7	0.7837
AT3G19660			unknown protein		Lus10033765 [exp]	16.8	0.7891
					Lus10017659 [exp]	21.5	0.7391
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	27.6	0.7970
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	27.7	0.7896
AT3G57990			unknown protein		Lus10016270 [exp]	27.8	0.6746

Compare expression of checked genes

Lus10001751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.