Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12730 305 / 2e-101 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 267 / 1e-86 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT2G45470 196 / 4e-59 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 183 / 3e-54 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G12660 79 / 1e-16 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT3G46550 77 / 2e-15 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G31370 73 / 1e-14 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT5G03170 71 / 7e-14 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 70 / 1e-13 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT2G04780 66 / 4e-12 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001178 [exp] 510 / 0 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10012344 [exp] 427 / 2e-149 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 424 / 2e-147 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 286 / 5e-94 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10022517 [exp] 281 / 3e-92 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10009235 [exp] 186 / 3e-55 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10038004 [exp] 107 / 3e-27 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10040821 [exp] 94 / 4e-21 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10016554 [exp] 94 / 5e-21 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168100 [exp] 353 / 1e-120 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 283 / 4e-93 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 274 / 1e-89 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G071700 [exp] 196 / 4e-59 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.018G097000 [exp] 101 / 9e-24 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.006G174900 [exp] 95 / 2e-21 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.001G037800 [exp] 79 / 3e-16 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G005100 [exp] 71 / 8e-14 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 71 / 1e-13 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G129200 [exp] 67 / 1e-12 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10001752 pacid=23170794 polypeptide=Lus10001752 locus=Lus10001752.g ID=Lus10001752.BGIv1.0 annot-version=v1.0 ATGTCTTCCTTAGTCGACAAGCACCTCTCAGAGTCGACGCTGAGGAACGTGCTGTCCCTCCACGTGCTTGTCGACTACTACGGGACTAAGAAGCTTCACC AGATAACAGGCGGATCCACCTTGACCTCCACCATGTTTCAGGCTACCGGGGCAGCTCCAGGGACTTCGGGTTTCTTGAACATCACGGATCTCAAAGGAGG GAAAGTGGCGTTTGGACCTGAGGAGAATAACGATGGCAAGATGGATGCTCTTTTTGTTAAGTCCGTAGTTGAAATGCCTTACAACATCTCCATCTTGCAA ATCAGCCAGGCCGTAAACTCGGTGGAAGCAGAGGCGCCAGCATCAGCACCATCACTAAACCTGACAGCAATCCGCAGGAAGCAAGGCTGCACCAAATTCT CCGACTTACTATCCTCCACGGGAGCAGTCACCACGTTTGAAGCTAACGTTGACGGAGGCCTAACCGTGTTCTTCCCATCAGACACCATCATAACATCCTT CGCCCCAAAGTATAAGAACCTAACTGACTCCCAAAAGCTGTCCCTCGTCCTCTACCATGGCATCCCAGTGTTCATGCCTATGCAGATGATGAAGTCCAAC AACGGCGTGGTCAATACCCTCGCCACCGATGGGGCTAGCAAGTACGACATCACGGTCCAGGACTACGGAGAGATCGTGAAGCTCAAGACCAAAGTGGTGA CGGCCACCATAACGGGGACGCTCAAGGAGCAAGACCCGTTGATCGTGTATAAGGTGGATAAAGTGTTGCAGCCCAAGGAGTTATTTAAGGCTGGCATGGA CAATGGCGATGATGTGGCTCCAGCTCCAGCTCCAAAAGGGGCGGCTAAGAAGAAGGGGAAGTTGGTAGCTGCGGATGGGCCGGATGCAGCTGATTCCCCC GAGGGGGACTCGGATGACTCCACCGCTGCGGATGAGGATACCAATGGAGCTGTTGGGATCAACGGTGGTAGATCGATGTCACTGTTTATGGGTTTGAGTT TGTGTATGGGGCTGGTACTGTTGCTTTGA
AA sequence Show only first row Show all	>Lus10001752 pacid=23170794 polypeptide=Lus10001752 locus=Lus10001752.g ID=Lus10001752.BGIv1.0 annot-version=v1.0 MSSLVDKHLSESTLRNVLSLHVLVDYYGTKKLHQITGGSTLTSTMFQATGAAPGTSGFLNITDLKGGKVAFGPEENNDGKMDALFVKSVVEMPYNISILQ ISQAVNSVEAEAPASAPSLNLTAIRRKQGCTKFSDLLSSTGAVTTFEANVDGGLTVFFPSDTIITSFAPKYKNLTDSQKLSLVLYHGIPVFMPMQMMKSN NGVVNTLATDGASKYDITVQDYGEIVKLKTKVVTATITGTLKEQDPLIVYKVDKVLQPKELFKAGMDNGDDVAPAPAPKGAAKKKGKLVAADGPDAADSP EGDSDDSTAADEDTNGAVGINGGRSMSLFMGLSLCMGLVLLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	1.0	0.9913
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	1.4	0.9898
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	2.4	0.9893
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10020022 [exp]	2.6	0.9804
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	3.7	0.9736
AT1G06980			unknown protein		Lus10026407 [exp]	4.0	0.9727
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	4.5	0.9826
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10037572 [exp]	5.2	0.9796
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	6.5	0.9819
AT3G19990			unknown protein		Lus10028680 [exp]	6.7	0.9821

Compare expression of checked genes

Lus10001752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.