Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31990 536 / 0 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) AT5G19550 327 / 6e-109 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT5G11520 324 / 3e-107 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT1G62800 301 / 4e-99 ASP4 aspartate aminotransferase 4 (.1.2) AT2G30970 286 / 1e-92 ASP1 aspartate aminotransferase 1 (.1.2) AT5G48220 104 / 4e-25 Aldolase-type TIM barrel family protein (.1.2.3) AT2G04400 95 / 4e-21 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001938 [exp] 656 / 0 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10043222 [exp] 334 / 1e-111 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 331 / 2e-110 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10022137 [exp] 331 / 9e-110 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10020720 [exp] 284 / 6e-92 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10029796 [exp] 284 / 7e-92 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10025252 [exp] 250 / 8e-79 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10001179 [exp] 134 / 4e-35 AT5G48220 534 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3) Lus10000181 [exp] 127 / 1e-32 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G260200 [exp] 584 / 0 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G022200 [exp] 576 / 0 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G082500 [exp] 337 / 7e-113 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G241600 [exp] 328 / 1e-108 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G241500 [exp] 299 / 9e-98 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.014G143300 [exp] 277 / 3e-89 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.006G107100 [exp] 274 / 5e-88 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.014G169100 [exp] 108 / 4e-26 AT5G48220 516 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00218 [flax] [poplar] IGPS Indole-3-glycerol phosphate synthase CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10001753 pacid=23170788 polypeptide=Lus10001753 locus=Lus10001753.g ID=Lus10001753.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCGGTGCTCTCTGCTGCATCTCCTTCCGTTTCTCCTCTCACTCACCGTCTCAAGGGCAAGGTGAGAGTCGGAAGTGACAATGTCAGCTCAT TGTTTAACAAGGACAAACGATATCCCCTTTTTCACTCGAAGTCTTCTGGGAGGATTAGGATGAGTCTTGCTGTTGATGTCTCCCGGTTTGAAGCCATAAC TATGGCTCCACCAGATCCAATCCTGGGAGTGTCTGAAGCTTTTAAGGCTGACAATGATCAAAAGAAGCTCAACCTTGGAGTTGGTGCTTATAGAACTGAA GAGCTACAGCCGTATGTGCTTGATGTTGTAAAGAAGGCGGAGAATCTTATGCTGGAGAAAGGTGATAATAAGGAGTATCTGCCTATTGAGGGTCTGGCAG CATTCAATAAGGTGACTGCTGAGCTGTTGTTTGGAGCTGACAACCCGGTGATAAAAGAGCAAAGGGTCGCCACAGTTCAAGGTCTCTCAGGTACTGGATC CCTCCGGTTGGCTGCAGTTTTGATTGAGCGATACTTCCCTGGTGCAAAAGTTCTGATTTCATCTCCAACTTGGGGGAATCACAAGAATATCTTCAATGAT GCTAGAGTTCCATGGTCTGAGTACAGATACTATGACCCGAAGACAGTTGGTCTGGATTTTGAAGGGATGATAGAAGACATAAAGGCTGCTCCTGAAGGAT CGTTTGTGTTGCTTCACGGCTGTGCTCACAACCCAACTGGCATCGATCCAACCCCAGAACAATGGGAGAAGATTGCAGATGCGATTCAGGAGAAGAACCA CATCCCATTTTTTGATGTTGCATACCAGGGCTTTGCTAGTGGAAGCCTTGACGAGGATGCATCATCAGTAAGACTATTTGCTGCGCGTGGTATGGAGATT TTTGTTGCTCAGTCATACAGCAAAAATCTAGGTCTCTATTCGGAGAGGATTGGAGCTATCAATGTCGTCTGCTCATCAGCAGATACTGCAGCAAGTTTGG CACATCGGTCAATTTCAGAATCCTCTCTCTTTTCTCTGAGATTTTGCTTTGCTATCATCTGTCGAATTGTTCTTATCACAAAGAAGCTTCTTGCAGGAGA GCGAGGCAAACTCATCCAAGGGAAAGGAATAACTGTGGTCAGTGAGTCTGGGCTGTTCACCCCTGAACATATTGCTTATGTTCAAGAAGCAGGAGTCCAA GCGGTCTTAGTCGGGGAATCGCTGGTGAAACAAAGTGATCCAGGACAAGGAATATCCGGTCTCTTTGGTAAACATATCTCCTCATAA
AA sequence Show only first row Show all	>Lus10001753 pacid=23170788 polypeptide=Lus10001753 locus=Lus10001753.g ID=Lus10001753.BGIv1.0 annot-version=v1.0 MASAVLSAASPSVSPLTHRLKGKVRVGSDNVSSLFNKDKRYPLFHSKSSGRIRMSLAVDVSRFEAITMAPPDPILGVSEAFKADNDQKKLNLGVGAYRTE ELQPYVLDVVKKAENLMLEKGDNKEYLPIEGLAAFNKVTAELLFGADNPVIKEQRVATVQGLSGTGSLRLAAVLIERYFPGAKVLISSPTWGNHKNIFND ARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADAIQEKNHIPFFDVAYQGFASGSLDEDASSVRLFAARGMEI FVAQSYSKNLGLYSERIGAINVVCSSADTAASLAHRSISESSLFSLRFCFAIICRIVLITKKLLAGERGKLIQGKGITVVSESGLFTPEHIAYVQEAGVQ AVLVGESLVKQSDPGQGISGLFGKHISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001753 [exp]	0	1
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034739 [exp]	1.0	0.8649
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	2.0	0.8566
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	2.4	0.8526
AT5G16730			Plant protein of unknown funct...		Lus10020373 [exp]	3.2	0.8270
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	8.2	0.8373
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10000620 [exp]	11.0	0.7387
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10039098 [exp]	12.5	0.7844
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	13.4	0.7866
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10011028 [exp]	20.0	0.7709
					Lus10037878 [exp]	20.6	0.8007

Compare expression of checked genes

Lus10001753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.