Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79420 415 / 9e-143 Protein of unknown function (DUF620) (.1) AT3G19540 306 / 2e-99 Protein of unknown function (DUF620) (.1) AT1G49840 298 / 6e-96 Protein of unknown function (DUF620) (.1) AT1G27690 288 / 4e-93 Protein of unknown function (DUF620) (.1) AT5G05840 265 / 8e-84 Protein of unknown function (DUF620) (.1) AT5G06610 240 / 3e-75 Protein of unknown function (DUF620) (.1) AT5G66740 215 / 1e-65 Protein of unknown function (DUF620) (.1) AT3G55720 213 / 5e-64 Protein of unknown function (DUF620) (.1) AT1G75160 202 / 3e-60 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001843 [exp] 735 / 0 AT1G79420 452 / 2e-157 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 320 / 1e-104 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 308 / 4e-100 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 266 / 4e-84 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10015972 [exp] 260 / 2e-82 AT5G06610 426 / 6e-149 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 254 / 3e-82 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 260 / 2e-81 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 258 / 2e-81 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013534 [exp] 250 / 7e-79 AT5G06610 400 / 7e-139 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174200 [exp] 469 / 8e-165 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 469 / 2e-164 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 317 / 1e-103 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 317 / 1e-103 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 313 / 6e-102 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 279 / 1e-89 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 275 / 7e-88 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.016G062400 [exp] 268 / 3e-86 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 261 / 3e-83 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 224 / 5e-69 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10001755 pacid=23159136 polypeptide=Lus10001755 locus=Lus10001755.g ID=Lus10001755.BGIv1.0 annot-version=v1.0 ATGGCGTCAAGATCATCAACCGGGCCACGAAACAACAACAACAACAAGCAACGATGGTGCGCCGTGCAACCCTTGACGCCATTAATGGAAGGCCCAGACC CAGAAATGCAAGAGCAATCTGCACGCTCATTATTATTGGGATTGCATAACAATTACTATCACAAGGAGACCTCCACTACTTCTAATTGGGACACTATCCG CGAATGGTTCCGCCATCAGAAGGCCACCGACTCTCCCGACAGCAGCAGCGACGGCATCTCTCCCCCGTCAGTACTCAATGGATCTTCCCGGAAGCTGCAG GGAGCCAAAAATACACAAGATTTGAGACTTTTGCTCGGTGTTTTGGGATGTCCTTTAGCTCCGATTCCCATCCCTCTGCCTAATCTGCCTAATCCACCCT TGTCTCCTGGTGAGGAGGAAGTGTGTAATATTGGCATCAAAGACATCCCGATGGCTAAATCGATGGCGCACTACATAATAAAGCAATATCTGGCGGCGAC GGGATGCTTGAAGGGGGAGAGGAGGAGGAGCAGCATGTACGCAGCAGGGAGCGTGAAGATGATCCGGTGCGAGACAGAGGTATCGTCGGGGAAGAATGTG AAGAGTTTGGGAGGGAAGAGCGCGGTGGAACACGGGTGCTTTGTGCTCTGGCAAATGCTGCCTTCCATGTGGTCTCTCGAACTTGCTGTTGGCATCAACG ATAGCAAGAATAATAGTAACTACCACCACCTGCTGGCCGGTAGTGACGGTAAGACTGTTTGGCGACACACACCGTGGCTGGGGACTCATGCCGCTAAAGG ACCACAACGCCCTCTCCGTCGTATCATCCAGGGGCTGGACCCAAAGAGCACGGGTAGGCTATTCGGAGGAGCAGAGTGGGTGGGAGAACAAAGCATAGGT GAAGAAGAATGCTTCGTACTGAAAGTAGCAGCAGAGCGTGCAGCCGTAATGGAGAGGAGCGAAGGCCCAGCCGAAGTACTCCGCCACGTACTCTACGGCT ACTTCTCCCAAAAGAGCGGCCTCCTTGTCTACCTGGAGGACTCCCACCTCACCAGAGTCGCAGCTGTCTCCCCAAACAACAACCACAACAACGATGTAGT TGATAGCATTAATAATGTCGATCATCATGATGGGAGCTGCTACGTGTACTGGGAGACCACGATAGGGAGCACGATTGGGGAGTACAGGGAAGTGGAAGGG GTAATGATAGCTCACGAAGGGAGGTCCATTGCCACTGTTTTTCGATTCGAGGAGCAGTCCGTTCAACACAGCAGGACCAGAATGGAGGAGCTGTGGCGTA TTGACGATGTCGTTTTCAACGTTCCGGGGCTTTCACTTGACCACTTCATCCCTCCTGCCGACATTTTTGTGCCGTGA
AA sequence Show only first row Show all	>Lus10001755 pacid=23159136 polypeptide=Lus10001755 locus=Lus10001755.g ID=Lus10001755.BGIv1.0 annot-version=v1.0 MASRSSTGPRNNNNNKQRWCAVQPLTPLMEGPDPEMQEQSARSLLLGLHNNYYHKETSTTSNWDTIREWFRHQKATDSPDSSSDGISPPSVLNGSSRKLQ GAKNTQDLRLLLGVLGCPLAPIPIPLPNLPNPPLSPGEEEVCNIGIKDIPMAKSMAHYIIKQYLAATGCLKGERRRSSMYAAGSVKMIRCETEVSSGKNV KSLGGKSAVEHGCFVLWQMLPSMWSLELAVGINDSKNNSNYHHLLAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKSTGRLFGGAEWVGEQSIG EEECFVLKVAAERAAVMERSEGPAEVLRHVLYGYFSQKSGLLVYLEDSHLTRVAAVSPNNNHNNDVVDSINNVDHHDGSCYVYWETTIGSTIGEYREVEG VMIAHEGRSIATVFRFEEQSVQHSRTRMEELWRIDDVVFNVPGLSLDHFIPPADIFVP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	0	1
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	1.0	0.9575
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007655 [exp]	1.7	0.9249
AT1G55790			Domain of unknown function (DU...		Lus10002759 [exp]	2.0	0.9310
AT1G14630			unknown protein		Lus10039139 [exp]	2.4	0.9178
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	2.8	0.9226
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	3.0	0.9075
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	3.2	0.9182
AT5G17850			Sodium/calcium exchanger famil...		Lus10013634 [exp]	3.2	0.9060
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	6.0	0.8895
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	6.3	0.9147

Compare expression of checked genes

Lus10001755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.