Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79250 322 / 2e-103 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 318 / 1e-101 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 281 / 2e-88 RSH3 root hair specific 3 (.1) AT5G47750 254 / 4e-77 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT3G27580 254 / 5e-77 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT4G26610 247 / 2e-75 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 247 / 3e-75 D6PK D6 protein kinase (.1) AT5G40030 239 / 2e-72 Protein kinase superfamily protein (.1) AT2G44830 239 / 9e-70 Protein kinase superfamily protein (.1) AT5G58140 232 / 1e-66 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022534 [exp] 394 / 3e-131 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10001840 [exp] 391 / 3e-130 AT1G79250 657 / 0.0 AGC kinase 1.7 (.1.2) Lus10028208 [exp] 389 / 4e-128 AT2G44830 639 / 0.0 Protein kinase superfamily protein (.1) Lus10038753 [exp] 251 / 7e-76 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 250 / 1e-75 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 247 / 4e-75 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10016629 [exp] 247 / 4e-74 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10002518 [exp] 239 / 2e-72 AT3G27580 504 / 3e-175 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10022272 [exp] 241 / 1e-71 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175900 [exp] 353 / 4e-115 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.008G080600 [exp] 348 / 7e-113 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G003800 [exp] 265 / 4e-81 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 261 / 2e-79 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 262 / 6e-79 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 255 / 3e-76 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 247 / 1e-73 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.017G075400 [exp] 243 / 1e-73 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.001G342000 [exp] 244 / 1e-70 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.006G114900 [exp] 238 / 2e-68 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001757 pacid=23159132 polypeptide=Lus10001757 locus=Lus10001757.g ID=Lus10001757.BGIv1.0 annot-version=v1.0 ATGGATGCAACAGCTCCTACGACGAACAATATCAACTCTGATAACAACAACAAAAACAAAAACACCAATATTATCTCTCATCAGACTGCAAAAAGATACG ATACATTCGGAAAGCCATCAAATATTTCTGACGGCGGTAGCAACATTAATAACGTGGCTATGCAGAATAACAATCAGCGTCTCCTACCGCCAGGCCCAGC AAGGTCGATGCCCCCCACTGGCGCCAACCCACAATACCAATACCAGTACCAACAACAACAGCAACAACAACAAATAACATCAGGAGGAGGAGGTAATGGG ATGAATACTAATGCAACAAGTACAAGCACTACCAGTAGCACGAGCAGCAGCCGGAGCGACAGTATAGACAGCAGCTCCACCAACACAACAACTACCGCTA ACAATATTCCAGCACCCTTGAAGCCCCACACTGGGGGAGACAGCAGGTGGGACTCAATCAACACCATCAACTCCCGAGGCTCCCCAATGGGTTTAAGCAA TTTCCGCCTCCTTAAGCGCCTCGGGTACGGTGACATCGGCAGTGTCTACCTCGTCGAACTACGTGGCACGACCAGCTACTTTGCCATGAAGGTCATGGAT AAGGCCTCATTAGCCAGTCGCAACAAGCTTCTCCGTGCACAGACAGAGCGGGAGATCTTGGGACTCCTTGACCACCCTTTCCTCCCTACCCTCTACTCCT ACTTTGAGACAGATAAGTTTTACTGCCTCGTCATGGAGTTTTGCTCTGGAGCTAGATTAGTCAATTCGTCGTTTGTTAGTGGGGGGGGAGGGGGAGGCGG GGGAGGAGCTGGGGGTGGAGCTGTAGGTATTGTTGGCGGTGGAGCTTCTGGTGTGGCCCTTGGAAGCGGAGGAGGAGCAATTCTCGACGAGGAGTTTGCA GTGCATGGTTGCATGCAACCGTCGACCTTCTTCCCAAGGATACTTCCAAGTAAGAAGAATAGAAAGTCAAAGTCAGACTTCGGATTGTTTGTGGGTGGAT CCCTCCCAGAGCTAATGGCGGAGCCCACGAATGTAAGATCAATGTCGTTCGTCGGGACCCACGAATACTTGGCGCCGGAGATTATAAGAGGTGAAGGACA CGGGAGCGCTGTGGACTGGTGGACATTTGGAATATTCTTGTACGAGCTACTCCATGGGACGACGCCTTTCAAAGGTTCTGGAAACAGAGCCACATTATAC AACGTAGTGGGGCAGCCCCTTCGGTTCCCTGACAACCCACAGGTCAGCTACCCGGCGCGGGACCTAATCAGAGGACTCCTTGTTAAAGAGCCACACAAGC GGATCGCTTACAAGCGTGGGGCCACAGAGATCAAACAACACCCATTTTTCGAAGGACTCAATTGGGCTCTTGTTCGGAGTCTAGCACCTCCGCATGTCCC TGATACTGTTGACTTCTCTCAATACGCCAGCAAAGAGCCGCCTCCATCATCGTCTTCAGTCGCTCCTGCTGCTGCATCAGCACCACACCCTCCTTCTGCT CCTACGACTGCATCAGGGGACCATAATTCTACGGGCGCTACTTCGACAACCACGACTGGAGCTGGTGGTGGCAGCGATCATAATCACAACGGACACGTCA GCCCCACTGACGAAGACTCCTCCTATATAGATTTTGAATACTTCTGA
AA sequence Show only first row Show all	>Lus10001757 pacid=23159132 polypeptide=Lus10001757 locus=Lus10001757.g ID=Lus10001757.BGIv1.0 annot-version=v1.0 MDATAPTTNNINSDNNNKNKNTNIISHQTAKRYDTFGKPSNISDGGSNINNVAMQNNNQRLLPPGPARSMPPTGANPQYQYQYQQQQQQQQITSGGGGNG MNTNATSTSTTSSTSSSRSDSIDSSSTNTTTTANNIPAPLKPHTGGDSRWDSINTINSRGSPMGLSNFRLLKRLGYGDIGSVYLVELRGTTSYFAMKVMD KASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGARLVNSSFVSGGGGGGGGGAGGGAVGIVGGGASGVALGSGGGAILDEEFA VHGCMQPSTFFPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLY NVVGQPLRFPDNPQVSYPARDLIRGLLVKEPHKRIAYKRGATEIKQHPFFEGLNWALVRSLAPPHVPDTVDFSQYASKEPPPSSSSVAPAAASAPHPPSA PTTASGDHNSTGATSTTTTGAGGGSDHNHNGHVSPTDEDSSYIDFEYF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12690		AGC1.5	AGC kinase 1.5 (.1.2.3)		Lus10001757 [exp]	0	1
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10013315 [exp]	3.0	0.7881
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10032903 [exp]	3.9	0.7766
AT1G18530			EF hand calcium-binding protei...		Lus10039961 [exp]	7.1	0.8077
AT3G56230			BTB/POZ domain-containing prot...		Lus10017414 [exp]	13.4	0.7329
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	16.3	0.7462
					Lus10000160 [exp]	19.4	0.8214
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10033098 [exp]	20.0	0.7264
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10014241 [exp]	20.5	0.7785
					Lus10038430 [exp]	21.9	0.7879
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	28.8	0.7316

Compare expression of checked genes

Lus10001757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.