Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54350 823 / 0 ABCD2 ATP-binding cassette D2, ABC transporter family protein (.1) AT4G39850 164 / 1e-41 AtABCD1, ACN2, CTS, PED3, PXA1 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) AT1G27940 57 / 5e-08 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G28345 51 / 3e-06 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT1G28010 49 / 1e-05 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT4G27420 45 / 0.0002 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT2G07680 44 / 0.0004 ATMRP11, ABCC13 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001839 [exp] 1008 / 0 AT1G54350 670 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10041690 [exp] 162 / 3e-41 AT4G39850 1404 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10024056 [exp] 160 / 2e-40 AT4G39850 1666 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041691 [exp] 89 / 5e-18 AT4G39850 613 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10017271 [exp] 57 / 5e-08 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10008139 [exp] 55 / 3e-07 AT3G28860 1002 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10013178 [exp] 54 / 6e-07 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10043069 [exp] 52 / 2e-06 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10035453 [exp] 49 / 1e-05 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G176400 [exp] 929 / 0 AT1G54350 910 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Potri.007G092200 [exp] 164 / 1e-41 AT4G39850 2061 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.005G076200 [exp] 164 / 2e-41 AT4G39850 2062 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.002G019600 [exp] 49 / 2e-05 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.011G043100 [exp] 43 / 0.001 AT1G30410 2090 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter CL0241 [flax] [poplar] ABC_membrane PF06472 [flax] [poplar] ABC_membrane_2 ABC transporter transmembrane region 2
Representative CDS sequence Show only first row Show all	>Lus10001758 pacid=23159125 polypeptide=Lus10001758 locus=Lus10001758.g ID=Lus10001758.BGIv1.0 annot-version=v1.0 ATGTCGTCGCTAGCACCGACGATACCACTTATACCGGCGAAATCTCAACTTCTTTCATTAACCATCCCTCTCGACCACCTTACTCACTCTTGTAAGCACC GCTCCTCGCTTCATCTCCACCGCTATATTAAACCGACGATGGCGGCCATGTCCATCTCTACCACTAGCAAACGTCCCCGCCGCTGCCGTAGTTCAACGTC TTGTTCCGCCGCTACACCTACTTCCTTTCCTTCTCAACCCCCACCATCGCCACCACCAGATCGCGGAGACGGAAATGATGATGCTGGGAGGAGAGAAACG CCGGAGATTCGCACGCTATTCCGGAGATTTTGGAAAGTGGCTGCTCCTTACTGGTTTTCAGAAGACAAGGACCAAGCACGACTGCAACTCGCTGCCGTCT TTGCTCTCACTTTGGGTACCACTGGTGTCAGCGTTGCTTTCAGTTTCCTCGGCCGGGACTTCTATAACGCCCTAGCTAACAAGGATCAAGAGCAGTTCAC CAAGCAACTACTCTACTATTTAGGAGCCTTTGCTGGAGGAATCCCGATCTTTGTGCTGAGAGATTACGCTAGGGAGACTCTCGCTTTAAGGTGGAGGTCC TGGATGACAAAATATTACATACACCGGTATCTAAAACACCAGATGTTTTACAAAATCCAGTCTCAATCTATCATTGATAATCCCGATCAGCGAATCGTTG ACGACCTCAGTTCTTTCACGGGGACAGCTCTGTCCTTCGCATTGTCTCTATTCAATGCTGCTGTTGACTTGATATCGTTTAGCAACATCTTGTATGGAAT TTACCCTCCCCTGTTTGTTGTCCTCCTTGTCTATTCAATTGGTGGAACAGCTATTAGTGTTTATCTTGGAAAGGAATTGGTCAGCTTAAACTTCATGCAA GAGAAAAAAGAAGCAGATTTCCGATATGGACTTGTGCGTGTTCGAGAAAATGCGGAATCGATTGCTTTCTATGGAGGTGAAGAAAATGAAATGCAACTTT TACTGCAGCGGTTCAAGAGTGCCTTTGAAAATTTGACACAATTGTTGATATCCTCAAGAAATCTGGAGTTCTTCACCAGCGGCTATAGATACCTGATTCA GATTCTTCCAGCTGCTCTCATCGCTCCTATGTTTTTCTCTGGGAAAATTGAATTTGGTGTCATTAACCAATCCGTTTCAGCTTTTAACCATATCCTTGGG GACTTTTCTCTTATTGTATACCAGTTCCAGTCCATCAGTGCATTCTCAGCTATCATTGATCGATCAGGTGAATTTGACGACCTTTTGGATTCGAATAGCT CAAACTCTCTCTCAGAGACGTTGGAAGAGATCACAGTGGAGTACTCTCCAACCAGAAGTTCGATGTCACAGGAAGCAAATGGGTCTTTGTTGATGGAACA GTGTAAAAACTTACTAGTGGTGAAGGACCTGACTCTCCAAACTCCAAGAAGTAAAGCTACATTGATTAAGAATTTGTCATTAGTGGTGAACCAAGACGAC CATTTGCTGGTCATGGGACCGAGTGGGAGCGGCAAAACTTCACTGTTAAGAGCTCTGGCTGGTCTGTGGAATTATGGGAAAGGGGAAGTTATTTTCTGTG TTAGTGGTGAAGAAGATACTGAGTCGGGGATAAAAGATGCCCAAGGAAGTCCTCGTATAAATGGAAACCAAAGGGACGTACTATTCCTTCCTCAAAAACC ATATATGGTTCTGGGAACACTTCGACAGCAATTGCTTTATCCCACATGGGCAGATGGTGGTATTTCCGTGTCTGAGGATGCTAAATCTGCTGGTTCGGTA ACCTTCTTGATGGAAAATCCAAAATCAGAAGAAGCTTGTGGTAAGCCTAGCAAGCCAACGACAGAGGATTTGATACAGGTTCTCAACAGAGTTCGTCTGA GCTACATATTGCCACGATTTGGTAGCCTAGATTCGACACATGAATGGTCTAGTGTTCTGTCCCTTGGTGAGCAGCAGCGGCTTGCATTTGCACGATTGCT ACTGTCAAAACCAAAGCTGGTTTTGTTGGACGAATCCACTAGTGCCTTAGATGAAAACAATGAGGGACATCTTTACGAGCAGATACGAGAGGCTGGTATA ACATACATTAGCGTTGGCCACAGGCGAACTCTTCTGAAGCAACATAGAAAGGTGTTGAATATTGCTGGTGCAGAAAATACAAACATTCAGGAATGTGACT GGTATGTTGAGACGATCAGTTCAGACCGGTGGCCATGA
AA sequence Show only first row Show all	>Lus10001758 pacid=23159125 polypeptide=Lus10001758 locus=Lus10001758.g ID=Lus10001758.BGIv1.0 annot-version=v1.0 MSSLAPTIPLIPAKSQLLSLTIPLDHLTHSCKHRSSLHLHRYIKPTMAAMSISTTSKRPRRCRSSTSCSAATPTSFPSQPPPSPPPDRGDGNDDAGRRET PEIRTLFRRFWKVAAPYWFSEDKDQARLQLAAVFALTLGTTGVSVAFSFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPIFVLRDYARETLALRWRS WMTKYYIHRYLKHQMFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFALSLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISVYLGKELVSLNFMQ EKKEADFRYGLVRVRENAESIAFYGGEENEMQLLLQRFKSAFENLTQLLISSRNLEFFTSGYRYLIQILPAALIAPMFFSGKIEFGVINQSVSAFNHILG DFSLIVYQFQSISAFSAIIDRSGEFDDLLDSNSSNSLSETLEEITVEYSPTRSSMSQEANGSLLMEQCKNLLVVKDLTLQTPRSKATLIKNLSLVVNQDD HLLVMGPSGSGKTSLLRALAGLWNYGKGEVIFCVSGEEDTESGIKDAQGSPRINGNQRDVLFLPQKPYMVLGTLRQQLLYPTWADGGISVSEDAKSAGSV TFLMENPKSEEACGKPSKPTTEDLIQVLNRVRLSYILPRFGSLDSTHEWSSVLSLGEQQRLAFARLLLSKPKLVLLDESTSALDENNEGHLYEQIREAGI TYISVGHRRTLLKQHRKVLNIAGAENTNIQECDWYVETISSDRWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	0	1
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	4.4	0.9185
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	4.7	0.9156
AT5G42070			unknown protein		Lus10032408 [exp]	8.5	0.9048
AT4G05090			Inositol monophosphatase famil...		Lus10007817 [exp]	9.2	0.8908
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10043252 [exp]	9.6	0.9101
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	10.9	0.8998
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10019508 [exp]	11.4	0.8948
AT2G36200			P-loop containing nucleoside t...		Lus10022694 [exp]	11.4	0.8233
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	12.0	0.8994
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10012137 [exp]	12.0	0.8999

Compare expression of checked genes

Lus10001758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.