Plant FIBer expression Database

Lus10001759 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79390 170 / 1e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001838
[exp]
153 / 8e-49 AT1G79390 131 / 2e-40 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G081400
[exp]
181 / 4e-60 AT1G79390 200 / 9e-68 unknown protein
Potri.010G174700
[exp]
90 / 1e-24 AT1G79390 91 / 1e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10001759 pacid=23159126 polypeptide=Lus10001759 locus=Lus10001759.g ID=Lus10001759.BGIv1.0 annot-version=v1.0
ATGTCGCTACTGTGGGAGAAGAGCGAGACATGGCGGTGGCTGGTGAGGAGGACGAGGGACTCCAGGTCCTTCTTCTTTACGTTTGCCACCGTCTGTGGCG
TCGTCCCCGGCGTCATCGGCTATTGTGTTATGCAAGCCACTAACTCCCGAAATTCGGAGCTGGAGCTCCGCCTCCGTCAGACCGCCCGTCCCGATTCTGT
CATGATGGGTAAAGTCAATCAAGAGAGACTAGCTGAGTACCTTGGCGAACTGCAAAGGAAAGAGGATACTAATGACCGATATGTAGCTGCTCTAAAAGGA
GAGACGTTGACCAGGAAACCTTACGTGAGAATTCAACCAATAACAGAGCAGACAAAAGCTGAGGCGAAACAGGAACAGCAAGGATCCAAAACTCAGAAGA
AACAGACTAGTTGA
AA sequence
>Lus10001759 pacid=23159126 polypeptide=Lus10001759 locus=Lus10001759.g ID=Lus10001759.BGIv1.0 annot-version=v1.0
MSLLWEKSETWRWLVRRTRDSRSFFFTFATVCGVVPGVIGYCVMQATNSRNSELELRLRQTARPDSVMMGKVNQERLAEYLGELQRKEDTNDRYVAALKG
ETLTRKPYVRIQPITEQTKAEAKQEQQGSKTQKKQTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G79390 unknown protein Lus10001759
[exp]
0 1
AT5G27430 Signal peptidase subunit (.1) Lus10004463
[exp]
5.7 0.9108
AT1G47640 unknown protein Lus10032870
[exp]
7.1 0.9023
AT5G58710 ROC7 rotamase CYP 7 (.1) Lus10040666
[exp]
7.5 0.8985
AT2G02050 NADH-ubiquinone oxidoreductase... Lus10019137
[exp]
11.6 0.9019
AT4G30010 unknown protein Lus10025458
[exp]
16.2 0.8729
AT3G56490 HIT3, HINT1 HISTIDINE TRIAD NUCLEOTIDE-BIN... Lus10035409
[exp]
17.7 0.8896
AT5G13450 ATP5 delta subunit of Mt ATP syntha... Lus10019706
[exp]
20.9 0.8939
AT1G22520 Domain of unknown function (DU... Lus10009454
[exp]
21.7 0.8871
AT1G65030 Transducin/WD40 repeat-like su... Lus10038299
[exp]
23.7 0.8935
AT5G59380 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.... Lus10005460
[exp]
26.3 0.8970

Lus10001759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.