Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79350 1466 / 0 EMB1135 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G01460 46 / 0.0002 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001836 [exp] 1764 / 0 AT1G79350 1838 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10001837 [exp] 166 / 2e-46 AT1G79350 145 / 2e-40 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174900 [exp] 1520 / 0 AT1G79350 1959 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G081200 [exp] 1516 / 0 AT1G79350 1971 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10001760 pacid=23159130 polypeptide=Lus10001760 locus=Lus10001760.g ID=Lus10001760.BGIv1.0 annot-version=v1.0 ATGCCTCAAATGCTTCCGCCGGAGCTCCTCTCCAGGGCCCACCCTCAACCTCACGGTCAAATGAGTACGCCGTCTCCTCCTCCTCAAGTACCTGCTCACG GCATTGATCCTTCCAAGATCCAGCTGCCCTGTGCTAATTGTAAGGCCCTACTCAATGTCCCCCATGGTTTGGCTCGTTTCGTCTGCCCTCAGTGTGGTGT TGATCTCGCCGTAGACGTTTCCAACCTCAAGCGCTTGCTTCGTCAGCCTAGGGCACCTCTTCCCTCACAGCTGCTTCCTCCGGCTCAGTTCACTCAATTG CGTCCTCCTCCTGCTGCCGTTCCTCCTCCTACGCTTCCTGAAGAAGTCAACGAGTTAGCAATTGAGGTAGAGCAGGAAGAAGACGAGGGTGGATTGGTGG GAGAAACATTTACAGATTATAGGCCTCCGAAAGTAAGCATTGGGCTACCTCATCCCGATCCTATTGTTGAAACATCTTCTTTGTCCGCCATACAGCCACC AGAGCCAACTTATGATCTAAAAATTAAAGATGAGTTGGAACGTACGCGGGCATTGTCATGCTTGCAGATTGAGACATTGGTTTATGCTTGTCAGAGACAC CAGCAGCATCTTCAATGTGGTAACAGGGCTGGATTTTTCGTTGGAGATGGGGCCGGTGTGGGTAAAGGTCGAACAATTGCCGGATTGATATTGGAGAACT GGCACTGTGGACGGAAGAAAGCAATTTGGATTTCAATTGGTTCCGATTTAAAGTTTGATGCAAGAAGGGACTTGGATGACATGGGTGCGCCATTTATTGA AGTGCATGCCCTAAACAAACTACCGTACTCCAAACTTGATTCAAAGAGTGTTGGGGTGAAGGATGGTGTTGTATTTCTGACATACAGTAGTCTCATTGCA TCATCTGAGAAAGGTCGTTCTCGACTGCAGCAGCTTGTACAGTGGTTTGGATCTGAATTTGATGGTCTTCTGGTATTTGATGAGTGCCACAAAGCCAAAA ATTTGGTACCTGAAGCTGGGAGCCAGCCAACACGAACTGGTGAAGCAGTTTTGGACATTCAGTTAGCAATTGAGGTAGAGCAGGAAGAAGACGAGGGTGG ATTGGTGGGAGAAACATTTACAGATTATAGGCCTCCGAAAGTAAGCATTGGGCTACCTCATCCCGATCCTATTGTTGAAACATCTTCTTTGTCCGCCATA CAGCCACCAGAGCCAACTTATGATCTAAAAATTAAAGATGAGTTGGAACGTACGCGGGCATTGTCATGCTTGCAGATTGAGACATTGGTTTATGCTTGTC AGAGACACCAGCAGCATCTTCAATGTGGTAACAGGGCTGGATTTTTCGTTGGAGATGGGGCCGGTGTGGGTAAAGGTCGAACAATTGCCGGATTGATATT GGAGAACTGGCACTGTGGACGGAAGAAAGCAATTTTGATGCAAGAAGGGACTTGGATGACATGGGTGCGCCATTTATTGAAGTGCCACAAAGCCAAAAAT TTGGTACCTGAAGCTGGGAGCCAGCCAACACGACCTGGTGAAGCAGTTTTGGACATTCAGTCCAGAATACCAGAGGCTCGTGTCGTTTATTGCTCAGCCA CTGGGGCATCTGAGCCCCGGAACTTGGGTTACATGGTCAGGCTTGGACTCTGGGGATCTGGAACATCTTTCCCTGACTTCCAAAAGTTCCTAGGTGCAAT GGAAAAAGGAGGCGTTGGAGCATTGGAACTTGTTGCAATGGACATGAAAGCAAGGGGAATGTATGTCTGTCGTACTCTTAGCTACAAAGGTGCAGAGTTT GAAGTTGTTGAAGCACCTCTGGAACCTGACATGATGGAAATGTACAAAAAAGCAGCTGAATTTTGGGCAGAGCTACGAGTGGAGTTGCTTTCAGCAAGTG CTTTCCTTGTGGATGAAAAACCTAAATCTAGTCAGTTATGGAGATTGTATTGGTCAAGCCACCAGCGGTTTTTTAGACACCTGTGCATGTCAGCTAAGGT GCCTGCTACTTTAAAACTAGCTAAGCGTGCTCTGATGGAAGATAAATGTGTAGTCATTGGTCTGCAAAGTACGGGGGAGGCACGGACAGAGGAAGCTGTC ACTAAATATGGTGTCGAGCTTGATGATTTTATTTCTGGACCACGAGAGTTGTTGCTAAAATTTGTTGAAGACAATTATCCCTTGCCTGATAAACCTGAAC CGCTCGATGGAGAGAGTGACACAGAGGAACTCCAACGGAAGAGACATTCAACAGGATCTGATGTTTCCTTGAAAGGAAGAGTTAGAAAAGTTGCGAGGCT GAAACCTTCAAAGAATCATGAAAGTGATGAAGAATCAGAAACTGATTCTGCAGCTGATTCCTCTGAATCTGATGATGATGATGAGTTTCAGATTTGTGAG ATATGCAATGGAGAATCGGAGAGTAAAAGACTCATAAGATGTTATTGTTGTGGGCAACTTGTGCACCCTTCATGTATAGTCCCACCTATTGTAGATATTC CATCTGAAGATTGGTCATGCCAGTCATGCAAGGAAAAAACAGAAGAGTTTCTCAAAGCAAGACATGTATACTTAGCTGAACTTATGAAGAGGTACGAAGT TGCTCTTGACCGCAAGTCAAAAATTTTGGAGATAATTCGCCTCTTCGATCTTCCCAACAACCCATTGGACGACATAATTGACCAGCTTGGAGGCCCAGAT AGAGTTGCTGAGATCACTGGAAGGAAGGGCATGCTCGTGAGAGCATCTAATGGGAAAGGTGTGACTTATCAGCAAAGGAATACAAAGGATGTTTCTATGG AAATGGTCAACATGCATGAAAAACAACAATTTATGGATGGCAAGAAATTGGTTGCTATCATTTCTGAAGCTGGGTCTGCTGGTGTTTCTCTGCAGGCAGA TAGACGAGCCATAAATCAGAAAAGGAGGGTTCATTTGACTCTAGAACTTCCTTGGAGTGCTGACCGAGCAATACAGCAATTTGGAAGGACTCATCGTTCA AATCAAGCCTCTGCCCCTGAATATAGGTTGTTGTTCACTGATCTTGGTGGAGAGCGGCGGTTTGCTTCTATTGTTGCTAAGAGATTGGAATCTCTAGGAG CTTTGACGCAAGGCGACCGCAGAGCTGGACCATCTTTGAGTGCCTACAATTATGATAGTGTTTATGGGAAAAAGGCTTTGGTGGTCATGTATAAAGGAAT AATGGAACAGGACACTTTACCTGTCGTCCCTCCTGGATGTTCAGCTGAGAAGCCAGAGACAACTCAAGAATTTATATTGAAAGCAAAAGCTGCCCTCATC TCTGTTGGAATAGTTCGGGACACTGTTCTTGGTAACGGTAAAGACTCTGGAAAGTTATCTGGGCGCATAATTGATTCAGATATGCATGATGTTGGTCGTT TTCTTAATCGACTCCTTGGTCTGCCTCCTGAGATTCAGAACAGGCTGTTCGAGTTATTTATCAAAATCTTAGATCTTTTGATCCACAATGCTCGTATTGA GGGAAATCTTGATTCAGGAATCATTGATATGAGAGCGAGCGTCATTGAACTCAAAGGGACTCCAAAGACCGTTCATGTGGATCAAATGTCTGGCGCCTCC ACAGTACTCTTTACTTTTTCCATGAACCGTGGAGTCACATGGGAGGCTGCAAATGCCATGCTTGATGGGAAGCAAAAGGATGGCATCGTTTGCTCCAATG ATGGATTCTATGAATCTAAGAGAGAGTGGTTAGGAAAACGTCACTTCATTTTAGCTTTCGAAAGCACTGCTTCTGGACTGTATAAGATAGTTAGACCAGC GGTTGGGGAGTCAGTAAGGGAGATGTCTCTGTCGGAGTTGAGAAACAAGTACAGAAAGCTGTCTTCTTTGGACAAAGCATGCAAGGGTTGGGAAGGTGAA TATGAAGTGTCGTCCACACAGTGCATGCATGGCCCTAACTGTAAGATTGGCAGCTTTTGTACCGTCGGAAGAAGGGTGCAGGAAGTGTACGTTCTGGGTG GCATCGTTCTTCCGGTCTGGGGTACCATAGAGAAGGCCCTTTCGAAACAGGGACGTCAGAGCCATAAGCGGCTGCGTATTGTGCGCTTAGAAACCACAAG CAATAATCATAGGATTGTTGGGGTTCTAGTTCCAAGTGGAGCTGTCGAAGCTGTACTTGAAGATCTAGCATGGGTGGAAGAGGTTGATGATTAA
AA sequence Show only first row Show all	>Lus10001760 pacid=23159130 polypeptide=Lus10001760 locus=Lus10001760.g ID=Lus10001760.BGIv1.0 annot-version=v1.0 MPQMLPPELLSRAHPQPHGQMSTPSPPPQVPAHGIDPSKIQLPCANCKALLNVPHGLARFVCPQCGVDLAVDVSNLKRLLRQPRAPLPSQLLPPAQFTQL RPPPAAVPPPTLPEEVNELAIEVEQEEDEGGLVGETFTDYRPPKVSIGLPHPDPIVETSSLSAIQPPEPTYDLKIKDELERTRALSCLQIETLVYACQRH QQHLQCGNRAGFFVGDGAGVGKGRTIAGLILENWHCGRKKAIWISIGSDLKFDARRDLDDMGAPFIEVHALNKLPYSKLDSKSVGVKDGVVFLTYSSLIA SSEKGRSRLQQLVQWFGSEFDGLLVFDECHKAKNLVPEAGSQPTRTGEAVLDIQLAIEVEQEEDEGGLVGETFTDYRPPKVSIGLPHPDPIVETSSLSAI QPPEPTYDLKIKDELERTRALSCLQIETLVYACQRHQQHLQCGNRAGFFVGDGAGVGKGRTIAGLILENWHCGRKKAILMQEGTWMTWVRHLLKCHKAKN LVPEAGSQPTRPGEAVLDIQSRIPEARVVYCSATGASEPRNLGYMVRLGLWGSGTSFPDFQKFLGAMEKGGVGALELVAMDMKARGMYVCRTLSYKGAEF EVVEAPLEPDMMEMYKKAAEFWAELRVELLSASAFLVDEKPKSSQLWRLYWSSHQRFFRHLCMSAKVPATLKLAKRALMEDKCVVIGLQSTGEARTEEAV TKYGVELDDFISGPRELLLKFVEDNYPLPDKPEPLDGESDTEELQRKRHSTGSDVSLKGRVRKVARLKPSKNHESDEESETDSAADSSESDDDDEFQICE ICNGESESKRLIRCYCCGQLVHPSCIVPPIVDIPSEDWSCQSCKEKTEEFLKARHVYLAELMKRYEVALDRKSKILEIIRLFDLPNNPLDDIIDQLGGPD RVAEITGRKGMLVRASNGKGVTYQQRNTKDVSMEMVNMHEKQQFMDGKKLVAIISEAGSAGVSLQADRRAINQKRRVHLTLELPWSADRAIQQFGRTHRS NQASAPEYRLLFTDLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSVYGKKALVVMYKGIMEQDTLPVVPPGCSAEKPETTQEFILKAKAALI SVGIVRDTVLGNGKDSGKLSGRIIDSDMHDVGRFLNRLLGLPPEIQNRLFELFIKILDLLIHNARIEGNLDSGIIDMRASVIELKGTPKTVHVDQMSGAS TVLFTFSMNRGVTWEAANAMLDGKQKDGIVCSNDGFYESKREWLGKRHFILAFESTASGLYKIVRPAVGESVREMSLSELRNKYRKLSSLDKACKGWEGE YEVSSTQCMHGPNCKIGSFCTVGRRVQEVYVLGGIVLPVWGTIEKALSKQGRQSHKRLRIVRLETTSNNHRIVGVLVPSGAVEAVLEDLAWVEEVDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	0	1
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	1.7	0.8362
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	2.0	0.8160
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	2.0	0.8647
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	2.8	0.8479
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	5.7	0.7930
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	7.5	0.8090
AT5G58100			unknown protein		Lus10008552 [exp]	7.9	0.8047
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10017464 [exp]	9.2	0.7627
AT5G44090			Calcium-binding EF-hand family...		Lus10024917 [exp]	10.1	0.7496
AT5G59830			unknown protein		Lus10025307 [exp]	12.1	0.8096

Compare expression of checked genes

Lus10001760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.