Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79340 483 / 4e-170 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79330 466 / 2e-163 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G79320 408 / 2e-141 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79310 404 / 2e-139 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G16420 223 / 6e-69 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1) AT5G04200 215 / 2e-66 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G02170 94 / 6e-21 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT4G25110 83 / 3e-17 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT5G64240 77 / 2e-15 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001835 [exp] 713 / 0 AT1G79340 554 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10012106 [exp] 166 / 1e-47 AT5G04200 392 / 2e-137 metacaspase 2f, metacaspase 9 (.1) Lus10010437 [exp] 135 / 4e-38 AT5G04200 204 / 2e-66 metacaspase 2f, metacaspase 9 (.1) Lus10035630 [exp] 93 / 1e-20 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10042857 [exp] 92 / 3e-20 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10028157 [exp] 91 / 9e-20 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10009321 [exp] 80 / 6e-16 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 75 / 2e-14 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10010436 [exp] 65 / 3e-13 AT5G04200 92 / 2e-24 metacaspase 2f, metacaspase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175000 [exp] 550 / 0 AT1G79340 496 / 2e-175 metacaspase 2d, metacaspase 4 (.1) Potri.008G081100 [exp] 540 / 0 AT1G79330 510 / 0.0 metacaspase 2b, metacaspase 5 (.1) Potri.006G026500 [exp] 173 / 1e-50 AT5G04200 426 / 4e-151 metacaspase 2f, metacaspase 9 (.1) Potri.016G024500 [exp] 172 / 4e-50 AT5G04200 425 / 1e-150 metacaspase 2f, metacaspase 9 (.1) Potri.014G052500 [exp] 87 / 1e-18 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 84 / 9e-18 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 82 / 9e-17 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 81 / 1e-16 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053100 [exp] 80 / 4e-16 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 76 / 1e-14 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF00656 [flax] [poplar] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Lus10001761 pacid=23159128 polypeptide=Lus10001761 locus=Lus10001761.g ID=Lus10001761.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGGCAGTTCTGATCGGATGCAATTACCCTGGAACCAAGGCTGAGCTCAAGGGCTGCGTCAACGATGTCAACAGGATGCACCGCTGTCTCG TCGATCGTTACGGTTTCTCACCCGACGACATCACCGTCTTGATCGATACCGACAGCTCCTACACCCAGCCCACTGGCAAAAACATCCGATCCGCCATCAC CGATCTTGTCCGCTCTGGCACCTCCGGCGACTTCCTCTTCCTCCATTACAGCGGCCACGGCACCAGGCTACCCGCCGAGACTGGCGAGGAAGATGACACT GGTTATGACGAGTGTATCGTCCCCTGCGACATGAATCTCATCACCGATGATGATTTCAGGGAATTTGTAGATCGGGTGCCTAGAGGGTGCCGCATAACAG TTGTATCTGATTCCTGCCACAGCGGAGGCCTTATTGACGAGGCCAAGGAGCAAATTGGAGACAGTACTCGTCAAGAGGAGGAGAAATCAGAATCTTCTGG TTTTGGATTCAAAAACTTCCTGCACAAGAGTGTAGAAGGTGCCTTAGAATCCCGTGGAATCCATGTTCCTTCGGGGCTGCGTCACCATTGTCAGGGTGAT GGTGAGGAGGAAGAAGAGGTTTCTGTTAAAGAGATTGAAACCGAGTCTGGTGAGCGGGCCTACGTCAAAAACAAATCCCTGCCGCTGTCCACGTTCATAG AAATGCTGAAGCAGAAGACGGGCAAAGACGACGTGGATGTAGGGAATCTGAGGCCAACTCTTTTCGACGCCTTTGGTGAAGATGCAAGCCCCAAGGTGAA GAAATTCATGAAGGTGATTCTGGACAAACTGCAACATGGCGATGGGGGGACTGGAGGTGGCGGATTCATGGGATTGGTGGGTGGTCTAGCTCAAGAGTTC CTCAAACAGAAACTTGAACAGGATGAGGAGTACGCAAAGCCTGCTCTTAAGACCGAGGTTGCGAGCAAGCAAGAGGTCTATGCTGGGGCAGCAAGGAAGT CGCTGCCAGGAGGTGCAATCCTCATCAGTGGGTGCCAGAGTGACCAAACTTCTGCTGATGCGACACCTGCGGGAAAGGTCGACCAAGCTTATGGAGCCCT TAGCAATGCGATACAGACTGTGATCGCTGAAGCAGACAATGACCAAGTTAGTAATGAAGAAGTGGTTAACAAAGCAAGGAAGTTGCTGAAGAAACAGGGT TTCACCCAGCAACCAGGGCTGTACTGCAGTGACGACCTAACTCGTGCTGCCTTCATCTGCAACTGA
AA sequence Show only first row Show all	>Lus10001761 pacid=23159128 polypeptide=Lus10001761 locus=Lus10001761.g ID=Lus10001761.BGIv1.0 annot-version=v1.0 MGKKAVLIGCNYPGTKAELKGCVNDVNRMHRCLVDRYGFSPDDITVLIDTDSSYTQPTGKNIRSAITDLVRSGTSGDFLFLHYSGHGTRLPAETGEEDDT GYDECIVPCDMNLITDDDFREFVDRVPRGCRITVVSDSCHSGGLIDEAKEQIGDSTRQEEEKSESSGFGFKNFLHKSVEGALESRGIHVPSGLRHHCQGD GEEEEEVSVKEIETESGERAYVKNKSLPLSTFIEMLKQKTGKDDVDVGNLRPTLFDAFGEDASPKVKKFMKVILDKLQHGDGGTGGGGFMGLVGGLAQEF LKQKLEQDEEYAKPALKTEVASKQEVYAGAARKSLPGGAILISGCQSDQTSADATPAGKVDQAYGALSNAIQTVIAEADNDQVSNEEVVNKARKLLKKQG FTQQPGLYCSDDLTRAAFICN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001761 [exp]	0	1
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	18.8	0.7465
AT2G13690			PRLI-interacting factor, putat...		Lus10020892 [exp]	20.2	0.7420
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10011020 [exp]	27.3	0.7415
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033583 [exp]	47.4	0.7258
AT2G34250			SecY protein transport family ...		Lus10007313 [exp]	48.5	0.6902
AT4G33640			unknown protein		Lus10020463 [exp]	49.3	0.7160
AT4G13840			HXXXD-type acyl-transferase fa...		Lus10016638 [exp]	67.2	0.7178
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	75.6	0.6976
AT3G57400			unknown protein		Lus10018074 [exp]	76.0	0.6927
AT2G37035			unknown protein		Lus10013807 [exp]	76.5	0.6709

Compare expression of checked genes

Lus10001761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.