Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54320 487 / 7e-174 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT3G12740 481 / 1e-171 ALIS1 ALA-interacting subunit 1 (.1) AT1G79450 477 / 7e-170 ALIS5 ALA-interacting subunit 5 (.1.2) AT1G16360 456 / 1e-161 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT5G46150 353 / 2e-121 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001834 [exp] 573 / 0 AT1G54320 471 / 1e-167 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) Lus10033283 [exp] 421 / 7e-148 AT1G79450 447 / 3e-158 ALA-interacting subunit 5 (.1.2) Lus10034744 [exp] 414 / 1e-144 AT3G12740 427 / 3e-150 ALA-interacting subunit 1 (.1) Lus10038516 [exp] 407 / 2e-142 AT5G46150 491 / 9e-176 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Lus10023290 [exp] 400 / 2e-139 AT5G46150 482 / 3e-172 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082100 [exp] 488 / 2e-174 AT3G12740 479 / 6e-171 ALA-interacting subunit 1 (.1) Potri.010G173900 [exp] 474 / 5e-169 AT3G12740 512 / 0.0 ALA-interacting subunit 1 (.1) Potri.017G139300 [exp] 466 / 1e-165 AT3G12740 437 / 5e-154 ALA-interacting subunit 1 (.1) Potri.004G081100 [exp] 452 / 3e-160 AT1G79450 429 / 4e-151 ALA-interacting subunit 5 (.1.2) Potri.011G082100 [exp] 375 / 4e-130 AT5G46150 456 / 4e-162 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Potri.001G381500 [exp] 363 / 7e-125 AT1G79450 398 / 2e-138 ALA-interacting subunit 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03381 [flax] [poplar] CDC50 LEM3 (ligand-effect modulator 3) family / CDC50 family
Representative CDS sequence Show only first row Show all	>Lus10001762 pacid=23159129 polypeptide=Lus10001762 locus=Lus10001762.g ID=Lus10001762.BGIv1.0 annot-version=v1.0 ATGAGCAACAATAACGCTGCCCCTTCCTCCAGTTCAGCCGCAACCAATGGATCTTCCGATGCTGCTGCACCCAGGCGCAATTCCAAGCGACCTAAATATT CTAAGTTTACACAACAGGAACTTCCTGCTTGTAAACCAATTCTAACACCAGGATGGGTGATCTCCGCTTTCCTGCTGGTCAGCGTGGTCTTTGTTCCCGT TGGAGTTGCTTCCTTGTACGCTTCAAGAGATGTTGTCGAGATTGTTAACCGCTATGAAACCGCTTGTATTCCTCCCCAAAACAGAACTAACAAGGTTGCG TATATCCAGAGTGCTGCTGCGAATAAAACATGTGTCAGAACGATAAGAGTTACAAAGCGTATGAAGGCACCGATTTATATATACTATGAGCTAGACAACT TCTACCAGAATCACCGCAGGTATGTGAAAAGCAGAAGTGATGCCCAATTGAGAAGTAACAGTGGACAAGACGATACGACTACTTGTAAACCCGAGGATAG AGTCAATGGGAGCGCCTCTATTGTCCCATGTGGGCTAATAGCTTGGAGTCTGTTTAATGATACCTATAGCTTCTCTCGTGGCAATGCGCAATTGGATGTG AATAAGAAAGATATCTCCTGGAAGAGTGACAGAAATCACAAGTTTGGTAAAGATGTTTTCCCAAAGAACTTCCAGAAAGGGAGTCTTATCGGCGGTGGGG ATCTCAATGAATCTATACCGCTGAGCGAGCAAGAGGATCTCATTGTTTGGATGAGAACTGCAGCTCTACCAACTTTCAGAAAGTTGTATGGGAAGATAGA GACGGACCTCAATGCAAATGACGAGATACGTGTAACGTTGCGCAATAACTACAACACCTACAGTTTCAATGGAAAGAAGAAACTTGTACTGTCAACAACA AGCTGGCTCGGTGGGAAGAACGACTTCCTTGGAATTGCCTACCTCACAGTTGGGGGTTTATGCTTGTTCTTGGCAGTATGCTTCCTCATCGTGTATCTTG TGAAGCCCAGGCGCCTTGGAGACCCCTCTTATTTGTCATGGAATAGAGGTCCCGGAGGACGTTAA
AA sequence Show only first row Show all	>Lus10001762 pacid=23159129 polypeptide=Lus10001762 locus=Lus10001762.g ID=Lus10001762.BGIv1.0 annot-version=v1.0 MSNNNAAPSSSSAATNGSSDAAAPRRNSKRPKYSKFTQQELPACKPILTPGWVISAFLLVSVVFVPVGVASLYASRDVVEIVNRYETACIPPQNRTNKVA YIQSAAANKTCVRTIRVTKRMKAPIYIYYELDNFYQNHRRYVKSRSDAQLRSNSGQDDTTTCKPEDRVNGSASIVPCGLIAWSLFNDTYSFSRGNAQLDV NKKDISWKSDRNHKFGKDVFPKNFQKGSLIGGGDLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIETDLNANDEIRVTLRNNYNTYSFNGKKKLVLSTT SWLGGKNDFLGIAYLTVGGLCLFLAVCFLIVYLVKPRRLGDPSYLSWNRGPGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001762 [exp]	0	1
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	2.6	0.9454
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10004620 [exp]	8.6	0.8997
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041684 [exp]	19.7	0.9315
AT2G39650			Protein of unknown function (D...		Lus10000956 [exp]	21.5	0.9239
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	21.7	0.9303
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10041702 [exp]	26.8	0.9289
AT3G47570			Leucine-rich repeat protein ki...		Lus10033384 [exp]	32.8	0.9260
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	34.6	0.8800
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10043219 [exp]	38.2	0.9167
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	43.7	0.9187

Compare expression of checked genes

Lus10001762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.