Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54310 647 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G16350 540 / 0 Aldolase-type TIM barrel family protein (.1) AT1G79470 526 / 2e-178 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000276 [exp] 567 / 0 AT1G16350 469 / 5e-164 Aldolase-type TIM barrel family protein (.1) Lus10036443 [exp] 170 / 3e-48 AT1G16350 113 / 1e-29 Aldolase-type TIM barrel family protein (.1) Lus10011631 [exp] 109 / 4e-28 ND 48 / 8e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173800 [exp] 687 / 0 AT1G54310 694 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G173600 [exp] 590 / 0 AT1G16350 661 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.008G082800 [exp] 573 / 0 AT1G16350 717 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00478 [flax] [poplar] IMPDH IMP dehydrogenase / GMP reductase domain CL0063 [flax] [poplar] NADP_Rossmann PF10672 [flax] [poplar] Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10001763 pacid=23159123 polypeptide=Lus10001763 locus=Lus10001763.g ID=Lus10001763.BGIv1.0 annot-version=v1.0 ATGTCTCCCTCTCAACCTCCCTCTCCCGCAACATCCGCCTCTCAATCCCTTGCGTCTCCTCTCCGATGGACACCCGCCCTCGGCGGTATCGGAATCGTCC ACTACAACACCACTCCTTCCGCCCAGGCCTCCTTCGTCAGATCCGTCAAATCCCGCGGCGTACCTCTGCTATCCAGTCCAATCGTCTTCTCCCCTGACTC CCGAATCGTTAACGAGTTTGACGATCCCACCGTCCCCTGCGTCCTCGTTACTGAATCGGGCGCCGCCAATTCCAAGCTCATCGGATACGTCACCAGGTCC AGCTGGTCCGAGAAGAAAGATTTGAAATTGGCCGATTACATGATCCCAGCTGATTCGTCCCTCCTCGTTCCATCCAGCTACGATTTGGATAAACTCGATT CCCACCTCCAAGATCAGCAAGGGCGAGACTTTGCTGTCCTGACCGAGGAAGAAGGTGGAATCCTCGATGTGGTTACTAAGGAGGCAGTGGAGAAGGTGAA GGGATTTCCTAAGTTTGGAAAGGGGACTGTTGGTAGCGACGGATCTTGGATGGTTGGAGCTGCGGTTGGAACGAGGGAATCAGACAAGGAGAGGCTGGAG CATTTGGTTAAGGCAGGGATTGATGTGGTGGTCCTGGATAGCTCTCAAGGGAACTCAATTTACCAGATTGAGATGATCAAATACGTCAAGAGGACTTATC CCCAGCTGGATGTGATTGGTGGGAATGTGGTGACAATGAGCCAGGCGCAGAATTTGATTGCTGCAGGTGTCGATGGATTGAGAGTTGGCATGGGATCGGG CTCCATCTGCACCACTCAAGAAGTTTGCGCTGTTGGGCGTGGCCAGGCAACTGCCGTGTACAAAGTCGCGTCTGTAGCTGCTCGGAGCAGCGTCCCAGTC ATTGCAGATGGTGGGATTTCAAATTCTGGGCACATTGTGAAGGCTCTGGTCCTTGGAGCATCTACGGTGATGATGGGTAGCTTTTTAGCTGGAAGTGCTG AAGCTCCGGGGCAATATGTGAATACGGAAAAGGGGAAAGTGAAAAAGTATAGGGGTATGGGATCACTGGAGGCAATGAGCCAAGGAAGCGATCAGAGGTA CTTGGGAGACAAGTCGAGGCTGAAGATTGCACAGGGAGTGGTGGGAACAGTTAAAGATAAAGGCTTTGCTCTGGAGTTCATACCATACACCATGCATGCA GTGAAGCAAGGGTTTCAGGATCTGGGAGCATCTTCTCTGCAGTCCGCGCATGAGTTGCTGAGATCTCAAACCCTGAGGCTTGAGGTTAGGACTGGAGCAG CACAAAAGGAAGGCGGAGTACATGATCTGGCGTCCTACAAGATCAATCAACAAACGATCACTGGGTGCTGTCGGACTGCTGGTGCTCAAGTGACAAGCGA GAGCATCGCATCCAGCATCATCCAGTGGAAGATGAAGACGACGATAACTATCATTGGCCAACTTCCAGCTCGCCTTGTCATGCGCTCTTCCATTTCCTCC TCCGCCGCCGCCGCCTCTACGCTTCATGAAATCGCCTCTTCTCACCCTAAAGGTTTCGCGAACGTAGTTCTGAAGAAAGGCAAGACGCAGCTCTTCAAGG AAGGTACGCCGATGGTGTACAGTGGAGCTGTGGATAGGATAATCGGCCGTCCTCCTCCCAAAACCGGTGACGTCGTCCTTCTATCTGACGCTGCCGTTAA GCCTATCGGATGGGGACTTTACAACTCTGCCTCCATGTTTGCTGTCCGTCTTATGCAGCTCGAACAAGAAGCTATTAGAGATCCTTGTTGTGCCTTAAAC ATGGAGAATCTGCTTCAGTCTAGAATTTCTGAAGCCGTAGAGCTACGTAGGAGACTTGGCCTGCCTTCTCACCAAACGAATGCATACAGACTCGTGAATA GTGAAGGAGACAGATTGTCAGGATTAATAGTTGATGTGTTTGGGGATATGGCTGTGGTTGCATCTTCTGCTGCTTGGGTTGAGAAGTATAGACAGGAAGT GGAGGCTTGCGTCAGTAGAATTGGTGAAGTTAATCATATCAACTGGAGACCGTCGGTTGAAATCCTGAAAGAAGAAGGTCTTGATGCAGCCCATTTTATA GACATCCAACCATCTTCTTGTCCACAGAGGACAAAGGTGGTGGAGAATGGAATTTCATATACGATTTCATTGGCTGGACAAAAGACTGGATTTTATGCAG ATCAGCGTGAAAGCCGGCATTTCATATCAACAATTTCGCAAGGTCAGAAAGTCGTAGATATTTGCTGCTACAGTGGCGGATTTGCTCTCAATGCTGCCAG AGGAGGTGCCATAAATGTAACTGGTGTGGACTCATCTTTGCCTGCTCTGGAACTCGCCAAAGAAAATGTGGCTCTCAACAACCTTGATCCAGAGAGAATA TCCTTCTTGAAGGAAGACGCGGCAGAGTTTATGAAGGGCGCCATCGCCAGAAATGAATCATGGGATATCGTTATTCTAGATCCGCCTAAACTCGCACCAA AACGAAAGGACCTAAGGAGTGCGTCTGGAATGTACAGAAATCTCAACACGTTAGCAATGAGAGTGGTCAAGAAAGGTGGTCTTCTTATGACTTGCTCGTG TTCAGGAGCCATGACTCAAAGCGGAACGTTCTTGCGTATTCTCCAGGCAAGTTTATTATTACTTTTTCAAACCCCTCTCGGTCAACGAAAGACTGCAGGA CCTCAGTTGAATTATAAATTTGAATTTGAATTTTGCCTACAGGCTGCTGCATTAACGGCTGGAAGGAGGATAAGCGTTGTCCGACAGGCTGGAGCTGCTT CTGACCATCCGGTTGACCCATCGTACCCGGAAGGAGTCTACCTCTCTAATGTACTACTTAGGGTAGTCTAA
AA sequence Show only first row Show all	>Lus10001763 pacid=23159123 polypeptide=Lus10001763 locus=Lus10001763.g ID=Lus10001763.BGIv1.0 annot-version=v1.0 MSPSQPPSPATSASQSLASPLRWTPALGGIGIVHYNTTPSAQASFVRSVKSRGVPLLSSPIVFSPDSRIVNEFDDPTVPCVLVTESGAANSKLIGYVTRS SWSEKKDLKLADYMIPADSSLLVPSSYDLDKLDSHLQDQQGRDFAVLTEEEGGILDVVTKEAVEKVKGFPKFGKGTVGSDGSWMVGAAVGTRESDKERLE HLVKAGIDVVVLDSSQGNSIYQIEMIKYVKRTYPQLDVIGGNVVTMSQAQNLIAAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASVAARSSVPV IADGGISNSGHIVKALVLGASTVMMGSFLAGSAEAPGQYVNTEKGKVKKYRGMGSLEAMSQGSDQRYLGDKSRLKIAQGVVGTVKDKGFALEFIPYTMHA VKQGFQDLGASSLQSAHELLRSQTLRLEVRTGAAQKEGGVHDLASYKINQQTITGCCRTAGAQVTSESIASSIIQWKMKTTITIIGQLPARLVMRSSISS SAAAASTLHEIASSHPKGFANVVLKKGKTQLFKEGTPMVYSGAVDRIIGRPPPKTGDVVLLSDAAVKPIGWGLYNSASMFAVRLMQLEQEAIRDPCCALN MENLLQSRISEAVELRRRLGLPSHQTNAYRLVNSEGDRLSGLIVDVFGDMAVVASSAAWVEKYRQEVEACVSRIGEVNHINWRPSVEILKEEGLDAAHFI DIQPSSCPQRTKVVENGISYTISLAGQKTGFYADQRESRHFISTISQGQKVVDICCYSGGFALNAARGGAINVTGVDSSLPALELAKENVALNNLDPERI SFLKEDAAEFMKGAIARNESWDIVILDPPKLAPKRKDLRSASGMYRNLNTLAMRVVKKGGLLMTCSCSGAMTQSGTFLRILQASLLLLFQTPLGQRKTAG PQLNYKFEFEFCLQAAALTAGRRISVVRQAGAASDHPVDPSYPEGVYLSNVLLRVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54310			S-adenosyl-L-methionine-depend...		Lus10001763 [exp]	0	1
AT1G16740			Ribosomal protein L20 (.1)		Lus10006327 [exp]	1.0	0.8008
AT2G31410			unknown protein		Lus10031995 [exp]	5.1	0.7965
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	5.7	0.7928
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	17.5	0.7143
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10039685 [exp]	23.3	0.7879
AT5G20130			unknown protein		Lus10038580 [exp]	25.4	0.7153
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10024396 [exp]	28.3	0.6710
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10024560 [exp]	37.9	0.7767
AT3G62940			Cysteine proteinases superfami...		Lus10005939 [exp]	44.2	0.7462
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10024134 [exp]	54.0	0.6934

Compare expression of checked genes

Lus10001763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.