Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79500 499 / 2e-172 ATKDSA1, KDSA Aldolase-type TIM barrel family protein (.1.2.3.4.5) AT1G16340 488 / 3e-168 ATKDSA2, ATKSDA Aldolase superfamily protein (.1.2.3.4) AT1G16330 379 / 1e-120 CYCB3;1 cyclin b3;1 (.1) AT1G20610 202 / 3e-57 CYCB2;3 Cyclin B2;3 (.1) AT1G76310 200 / 3e-56 CYCB2;4 CYCLIN B2;4 (.1) AT5G06150 200 / 3e-56 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT4G35620 199 / 7e-56 CYCB2;2 Cyclin B2;2 (.1) AT3G11520 192 / 1e-53 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT2G17620 191 / 2e-53 CYCB2;1 Cyclin B2;1 (.1) AT4G37490 188 / 3e-52 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009595 [exp] 407 / 9e-137 AT1G79500 374 / 9e-132 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10009596 [exp] 404 / 1e-131 AT1G16340 376 / 3e-128 Aldolase superfamily protein (.1.2.3.4) Lus10027741 [exp] 364 / 2e-119 AT1G79500 369 / 4e-129 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10012261 [exp] 222 / 2e-63 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10016015 [exp] 218 / 7e-63 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10036080 [exp] 199 / 5e-56 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 198 / 1e-55 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10030746 [exp] 190 / 8e-53 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 186 / 1e-51 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061900 [exp] 499 / 2e-172 AT1G79500 531 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Potri.005G199100 [exp] 494 / 1e-170 AT1G79500 524 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Potri.010G173200 [exp] 445 / 6e-146 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 428 / 2e-139 AT1G16330 497 / 1e-168 cyclin b3;1 (.1) Potri.005G100000 [exp] 216 / 5e-62 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.002G010000 [exp] 214 / 3e-61 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 211 / 2e-60 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.001G272000 [exp] 207 / 3e-59 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.009G165800 [exp] 207 / 3e-59 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.016G033000 [exp] 206 / 3e-58 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain CL0036 [flax] [poplar] TIM_barrel PF00793 [flax] [poplar] DAHP_synth_1 DAHP synthetase I family
Representative CDS sequence Show only first row Show all	>Lus10001765 pacid=23159133 polypeptide=Lus10001765 locus=Lus10001765.g ID=Lus10001765.BGIv1.0 annot-version=v1.0 ATGGATCCAACAACACTGATCAACCAGCTAAAGTCGGCGGATCCGTTTTTCTTGCTTGCTGGCCCCAATGTCATCGAGTCCGAGGAGCACATTTTCAAGA TGGCCAAACACATCAAGGCCATTTCCACCAGAGTTGGGTTGCCTTTGGTCTTCAAGTCAAGTTTTGACAAAGCTAACAGAACTTCCTCCAAGTCTTTTCG AGGTCCAGGGTTGATCGAAGGATTGAAGATCCTTGAGAAGGTTAAAGTAGCGTACGACCTGCCCATAGTCACCGACGTGCATGAAAGCATTCAGTGTGAA GACGTTGGCAAAGTTGCAGATATCATACAGATTCCAGCATTTTTATGTCGCCAGACAGACCTGCTAGTTGCAGCTGCCAAGACCGGGAAGATTATAAATA TCAAGAAAGGCCAGTTTTGTGCTTCTAGTGTAATGGCGAACTCGGCCGAGAAGGTTAGACTGTCAGGAAATCAAAATGTGATGGTTTGCGAGAGAGGAAC TATGTTTGGATATAATGATTTGATTGTTGATCCCCGCAATCTTGAGTGGATGAGAGAGGCTAATTGCCCTGTTGTTGCTGATATAACTCATTCACTACAA CAACCTGCTGGTAAAAAGTTGGATGGTGGAGGAGTTGCCAGTGGAGGTCTCCGTGAACTAATTCCATGCATAGCAAGAACAGCTGTTGCTGTTGGGGTGG ATGGAATTTTTATGGAGGTGCATGATGATCCATTGAACGCACCGGTGGATGGTCCGACACAGTGGCCACTGCGGAACTTGGAGGAACTGCTAGAGGAGCT CAAGGCGATAGCTAGCCAGAAAAGAGCTGGGAAGAGAAAGAGGAAAACAGAATTAGGTGTTGCTCCACGAATCAACTGCTTCGATGGTTATCGCCAAAAG AAGAGCTCCCCTACGACCCAGTCAACACGCAGTGCTGAAACTCGCCCTCAAACCCTTGCTGCTGCAAGTACATGCAGAAGACCGTTTGTGCCATCTGGCA CTGGAAATCTTTCGAAGGTCTATTCAAAGATTGGGCAGAACATCAAAGACAAGAATGAAAAAGATGTGAAAAATACGGTGAGAAGAAAAGCATTAGCTGA TGTAAGCAATGTCGGCCGCAGTTTTCAAACAACCGCTGGAAAAAAGCCATTGGTGTCAACGAGCTCAAATTCTAGGAACGTGAACTCCAAAACGAGAAAA CCTTCATTGGAAAATGATAAAGGTCCAGACAAGACCCTGAAGATTGGCAGTTTTACAGTTAAGGCCAAACTGGGTAAGAAAGTAGTTGTGCAAGTGGGCA AGGGTAGTGACCCTCTTTGGAGGAATAGAGCAAGTGAAGGTTCAATACCAGTGGCTACAAGTACCAGGCATGGTTGCAACACGTCCAACAAATCTCTTAG GCCATTAGCGAAGACTGCAATTGATTATTCCCATGGCTATAAGGTTGCGAGACCAAAAGTTGCAGCCCACACTGAGAACCCCTCCTCCATTGCAGCAATC ACATCTGCAGGGAACAACACAATTGAGGCAGCTTGTGTTATGGAGAATGTTCCAATAATTGCTTCCTCTGAACTGTCTAGTAGAGAGACTTTATCTGATG GCGATAAGACAAGTGTGGTTGATTTGGACATTATTTCTAATAGAAAATCTCGTCGTAGAAGATCTTATACTTCACTCTTGATGACAAGGTCAAAGCTATT AGAAGAGCATAAAATTTTGCCAAGCATAGATGATAACTGCAATCAATTGGATGTTGCTGAGTATGTGGACGACATATATCAGTATTACTGGTCTTCGGAG AGCCATAATAATCCCTTGGGTTCTTACATGTCAACACGGACTGATATTACCCCTCACATGCGAGGGATATTGATAAACTGGTTAATCGAGGTACACAGCA AATTTCAATTGATGCAAGAAACACTATATCTGATGGTCACGTTGTTGGACCAATACCTATCTCAAGTCCAGATCAAGAAGAACGAGCTGCAACTAGTTGG TCTCACTGCCTTGTTGCTGGCATCAAAGTATGAGGACTTCTGGCATCCTAGGATCAAAGATTTGATAAGTATCTCTGCTGAGGTCTGTACACAAGCGCAA GTGCTGGAAATGGAGAAATTCGTTCTAAGGAAACTGAAGTTTCGTATGAATTTTCCTACACCTTACGTGTTTATGCTAAGATTTCTAAAGGCTGCTCAGT CAGAGTCTAAGCTTCAACACCTGGCATCCTACCTCATTGAGCTGTGTTTAGTGGAATACGAAGCTTTGAAGTTCAAGCCATCCATGATAAGTGCGTCTGC TATCTTTGTCGCCCGGTGTACTCTGCATATAGCTCCAGCATGGACACCTTTACTTGTAGAACATGCTCGTTATGATGTTTTACAACTCAGGGACTGTGCT AAGATGATCTTAAAGTTTCAAAAAGCAGCAAAAACAGCCTCGACGAAAGTCACGTACGAGAAGTTTCTGAGCCCTAATCTGGATCGTGTAGCTGGGATTA AGCCCTTAGATATTCTTCCACATTGA
AA sequence Show only first row Show all	>Lus10001765 pacid=23159133 polypeptide=Lus10001765 locus=Lus10001765.g ID=Lus10001765.BGIv1.0 annot-version=v1.0 MDPTTLINQLKSADPFFLLAGPNVIESEEHIFKMAKHIKAISTRVGLPLVFKSSFDKANRTSSKSFRGPGLIEGLKILEKVKVAYDLPIVTDVHESIQCE DVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMANSAEKVRLSGNQNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQ QPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRNLEELLEELKAIASQKRAGKRKRKTELGVAPRINCFDGYRQK KSSPTTQSTRSAETRPQTLAAASTCRRPFVPSGTGNLSKVYSKIGQNIKDKNEKDVKNTVRRKALADVSNVGRSFQTTAGKKPLVSTSSNSRNVNSKTRK PSLENDKGPDKTLKIGSFTVKAKLGKKVVVQVGKGSDPLWRNRASEGSIPVATSTRHGCNTSNKSLRPLAKTAIDYSHGYKVARPKVAAHTENPSSIAAI TSAGNNTIEAACVMENVPIIASSELSSRETLSDGDKTSVVDLDIISNRKSRRRRSYTSLLMTRSKLLEEHKILPSIDDNCNQLDVAEYVDDIYQYYWSSE SHNNPLGSYMSTRTDITPHMRGILINWLIEVHSKFQLMQETLYLMVTLLDQYLSQVQIKKNELQLVGLTALLLASKYEDFWHPRIKDLISISAEVCTQAQ VLEMEKFVLRKLKFRMNFPTPYVFMLRFLKAAQSESKLQHLASYLIELCLVEYEALKFKPSMISASAIFVARCTLHIAPAWTPLLVEHARYDVLQLRDCA KMILKFQKAAKTASTKVTYEKFLSPNLDRVAGIKPLDILPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10001765 [exp]	0	1
AT1G16340		ATKDSA2, ATKSDA	Aldolase superfamily protein (...		Lus10009596 [exp]	4.2	0.9072
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10027967 [exp]	6.3	0.9065
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10040248 [exp]	6.4	0.9283
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10020504 [exp]	10.2	0.8819
AT1G72250			Di-glucose binding protein wit...		Lus10005582 [exp]	13.1	0.9264
AT2G27060			Leucine-rich repeat protein ki...		Lus10026756 [exp]	13.4	0.8885
AT1G65710			unknown protein		Lus10010952 [exp]	14.1	0.9232
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10034060 [exp]	15.4	0.9189
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10009595 [exp]	16.2	0.8885
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10026613 [exp]	16.7	0.8748

Compare expression of checked genes

Lus10001765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.