Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16320 275 / 8e-93 Uncharacterized conserved protein (DUF2358) (.1) AT1G79510 273 / 6e-92 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) AT2G46220 189 / 2e-59 Uncharacterized conserved protein (DUF2358) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009597 [exp] 460 / 7e-166 AT1G79510 284 / 2e-96 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10010135 [exp] 179 / 2e-55 AT2G46220 254 / 2e-85 Uncharacterized conserved protein (DUF2358) (.1) Lus10012651 [exp] 178 / 4e-55 AT2G46220 256 / 4e-86 Uncharacterized conserved protein (DUF2358) (.1) Lus10027002 [exp] 40 / 0.0009 AT1G65230 328 / 5e-113 Uncharacterized conserved protein (DUF2358) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173000 [exp] 288 / 5e-98 AT1G79510 357 / 4e-125 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.014G092200 [exp] 181 / 3e-56 AT2G46220 273 / 5e-93 Uncharacterized conserved protein (DUF2358) (.1) Potri.008G083400 [exp] 163 / 5e-51 AT1G79510 192 / 1e-62 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10001766 pacid=23159124 polypeptide=Lus10001766 locus=Lus10001766.g ID=Lus10001766.BGIv1.0 annot-version=v1.0 ATGGCGTTCATTCTTCCCAACTTCTCTCCTAAGCTCCTCGCTTACAACCCCAAAGAAAAGTCAAGTCAATCCCACCAATTCACTCTTCATTCCGCCTCTC ATCTGCCGCCGTCCTTCACCGTCGCCGCCGCCGCCACCACCACCTCAACGTCGACAGAGCCGTCGGCATCCACCACTCCTTCCTCTACTCTTCCCCCGTC TCCCAACAATCAGCGCAACGATTTCTACGTCAGCCTAGGCCTCGCCGTCCGGACCCTTCGAGAGGACATGCCATCCGTCTTCGTCAGAGACCTCAATTAC GACATCTACAGGGATGATATAACGTTTCAAGACCCAACCAACACGTTCACCGGAATAAGCAACTACAAGCTGCTATGCTGGGCGCTGAGGTTCCACGGCA AGCTACTGTTCAAGGACATTGCTGTCGACGTGTACAGAATCTGGCAGCCATCAGAGAATGTGATACTGGTACGTTGGAACGTGAAGGGAATCCCCAGGGT GCCATGGGAGGCAAAGGGAGAGTTCCAGGCTACTTCCACTTATAAACTGGACAGAAACGGAAAGATTTACGAGCACAAGGTGGATAACTTGGCTTTCAAC TTCCCGCAACAGTCACTCAGGCCTGCTGCGGCTTCCATTGCCGATTTGGTAGCTGCTTGTCCCGCCCGTGTCAACCCTTCTTACTTGTTGTGGCAGCCTG AGGAGGATTTGGCTTCGTCATCGGATTGTTCGTGGTTGGAATTCTACGATGCAGTTCGAGGCACCTTGAGCCAGATGTCTTGTTATGATGGGATGCTGCT GACTTGA
AA sequence Show only first row Show all	>Lus10001766 pacid=23159124 polypeptide=Lus10001766 locus=Lus10001766.g ID=Lus10001766.BGIv1.0 annot-version=v1.0 MAFILPNFSPKLLAYNPKEKSSQSHQFTLHSASHLPPSFTVAAAATTTSTSTEPSASTTPSSTLPPSPNNQRNDFYVSLGLAVRTLREDMPSVFVRDLNY DIYRDDITFQDPTNTFTGISNYKLLCWALRFHGKLLFKDIAVDVYRIWQPSENVILVRWNVKGIPRVPWEAKGEFQATSTYKLDRNGKIYEHKVDNLAFN FPQQSLRPAAASIADLVAACPARVNPSYLLWQPEEDLASSSDCSWLEFYDAVRGTLSQMSCYDGMLLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	0	1
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	1.4	0.9738
AT3G52740			unknown protein		Lus10020614 [exp]	1.4	0.9634
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	1.7	0.9624
AT3G56290			unknown protein		Lus10029051 [exp]	3.2	0.9551
AT2G04790			unknown protein		Lus10012354 [exp]	3.7	0.9263
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	4.0	0.9582
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	4.6	0.9476
AT2G30300			Major facilitator superfamily ...		Lus10042234 [exp]	4.9	0.9127
AT5G14860			UDP-Glycosyltransferase superf...		Lus10022222 [exp]	6.0	0.9289
AT3G52520			unknown protein		Lus10029420 [exp]	7.2	0.9102

Compare expression of checked genes

Lus10001766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.