Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15750 291 / 4e-102 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1) AT5G15200 49 / 2e-07 Ribosomal protein S4 (.1.2) AT5G39850 47 / 2e-06 Ribosomal protein S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012839 [exp] 50 / 1e-07 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10030487 [exp] 50 / 1e-07 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10008624 [exp] 49 / 3e-07 AT5G15200 342 / 8e-122 Ribosomal protein S4 (.1.2) Lus10042193 [exp] 46 / 8e-06 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101200 [exp] 313 / 7e-111 AT5G15750 291 / 6e-102 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1) Potri.004G113600 [exp] 312 / 3e-110 AT5G15750 312 / 3e-110 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1) Potri.011G094500 [exp] 51 / 5e-08 AT5G39850 336 / 3e-119 Ribosomal protein S4 (.1) Potri.016G076500 [exp] 47 / 9e-07 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.016G076800 [exp] 47 / 9e-07 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.007G056100 [exp] 47 / 1e-06 AT5G39850 337 / 1e-119 Ribosomal protein S4 (.1) Potri.006G209700 [exp] 47 / 1e-06 AT5G39850 325 / 6e-115 Ribosomal protein S4 (.1) Potri.018G062300 [exp] 47 / 2e-06 AT5G39850 332 / 1e-117 Ribosomal protein S4 (.1) Potri.006G209801 [exp] 42 / 2e-05 AT5G15200 200 / 7e-67 Ribosomal protein S4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain CL0492 [flax] [poplar] S4 PF00163 [flax] [poplar] Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001767 pacid=23159137 polypeptide=Lus10001767 locus=Lus10001767.g ID=Lus10001767.BGIv1.0 annot-version=v1.0 ATGAGGAAGTTGAAGTATCATGAGAAGAAGCTTCTAAAGAAGGTCAATCTCTTTGATTGGAAGAGGGAAGGTAACCATAGGGAATCCCAGGTGATGCAAC GCTACCATGTTGTCGATCGTGATGACTACAAGAAATACTCGGGTTTGTGCCGGATGGTGCAGAAATTGGTCAACATCTTGAAACAGATGCACCCCAAAGA CCCCTATCGCATTGAGATGACTGATATGCTTCTGGAGAAATTATATAACATGGGCGTTATACCAAGCAGGAAGAGCTTAGCCCTATGCGACCGCCTGTCA GTTTCTTCCTTCTGCAGACGAAGGCTTGCAACTGTGTTAGTACGTTTGAAGTTTACTGAACATCTGAAAGAAGCAGTGACGTTCATCGAACAGGGCCATA TTCGAGTAGGTCCAGAGACAGTGACTGACCCTGCATTCCTGGTTACTAGGAACATGGAAGACTTCATCACCTGGGTGGATACATCCAAGATTAGGAGGAA GGTGCTACAGTACAACGATAAACTCGACGACTATGATGCCATGAACTGA
AA sequence Show only first row Show all	>Lus10001767 pacid=23159137 polypeptide=Lus10001767 locus=Lus10001767.g ID=Lus10001767.BGIv1.0 annot-version=v1.0 MRKLKYHEKKLLKKVNLFDWKREGNHRESQVMQRYHVVDRDDYKKYSGLCRMVQKLVNILKQMHPKDPYRIEMTDMLLEKLYNMGVIPSRKSLALCDRLS VSSFCRRRLATVLVRLKFTEHLKEAVTFIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIRRKVLQYNDKLDDYDAMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Lus10001767 [exp]	0	1
AT4G39200			Ribosomal protein S25 family p...		Lus10021706 [exp]	4.1	0.9366
AT1G48830			Ribosomal protein S7e family p...		Lus10028789 [exp]	10.0	0.9341
AT3G16080			Zinc-binding ribosomal protein...		Lus10037549 [exp]	11.5	0.9341
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001372 [exp]	11.7	0.8778
AT2G47640			Small nuclear ribonucleoprotei...		Lus10026556 [exp]	12.8	0.9130
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10021978 [exp]	14.1	0.9317
AT3G01790			Ribosomal protein L13 family p...		Lus10032063 [exp]	15.6	0.9233
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	17.7	0.9088
AT1G13690		ATE1	ATPase E1 (.1)		Lus10004641 [exp]	18.2	0.9212
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10022881 [exp]	18.4	0.9157

Compare expression of checked genes

Lus10001767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.