Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16310 513 / 0 Cation efflux family protein (.1) AT1G79520 496 / 3e-174 Cation efflux family protein (.1.2) AT2G39450 378 / 5e-128 ATMTP11 Cation efflux family protein (.1) AT3G58060 358 / 5e-120 Cation efflux family protein (.1) AT2G47830 58 / 1e-08 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009598 [exp] 813 / 0 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 416 / 7e-143 AT2G39450 587 / 0.0 Cation efflux family protein (.1) Lus10023439 [exp] 407 / 3e-139 AT2G39450 585 / 0.0 Cation efflux family protein (.1) Lus10016239 [exp] 365 / 5e-123 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10029304 [exp] 365 / 9e-123 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10000061 [exp] 353 / 7e-121 AT1G16310 165 / 6e-49 Cation efflux family protein (.1) Lus10016242 [exp] 99 / 6e-25 AT3G58060 119 / 1e-33 Cation efflux family protein (.1) Lus10040922 [exp] 60 / 2e-09 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172700 [exp] 607 / 0 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 585 / 0 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.010G172600 [exp] 540 / 0 AT1G16310 504 / 2e-178 Cation efflux family protein (.1) Potri.010G172800 [exp] 506 / 3e-178 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.010G172900 [exp] 502 / 4e-176 AT1G16310 572 / 0.0 Cation efflux family protein (.1) Potri.008G049600 [exp] 418 / 7e-144 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.010G211300 [exp] 415 / 2e-142 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.003G215600 [exp] 361 / 2e-121 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010200 [exp] 359 / 2e-120 AT3G58060 540 / 0.0 Cation efflux family protein (.1) Potri.001G010000 [exp] 353 / 3e-118 AT3G58060 529 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10001768 pacid=23159131 polypeptide=Lus10001768 locus=Lus10001768.g ID=Lus10001768.BGIv1.0 annot-version=v1.0 ATGGAGGCGGATGCAGAGAGTAGTAGTAGTGAATTAGTTGGTATTATGAACAAGGAAGAAGAAGAGATGAGGCCTCCGCCATGGAGGCTGAACTTGGATA TTTACGAAATGAAGCTGCTCAAAGGAATTGCTGCGTTGTCGGCGGCCAAGGCGGATTATAGTTATCAGACTAGTAGTCTTCACTGGTTCAATGCAGGACG AGCATCAAGTCTAGCTAGGATGGTGGGGAACCGTACGCCTAGTCCACGAATCGATTCGTTCGATTACAGAGTCGAGCTTCTGTCGCCACCACCTCCGGGG GAGAGGGCGGCTCAAACCAGTTTACCTTCATGGCGTCTTGATATTGACAAATTCCAGCTCCCATCTCATACTACTACTTGTACAAGTACCACTACTATCA GTACTAGTACCCCTCGGAGGCAGCAGCAGCGTCAAATTCCTTCTTTTCTTGCATCCCTGCGGAAGAAAGAAAGGAAGGTGGCACAATACTACAAGGCACA ACAGGACCTTGTGAAGGAGTTCAATGAAGTGGAGTCCTTCGCCGAGTGTGGGGTTATGCCAGGAGGACAAATGACAGATAAGGAAATTAGAGATGTCGCG AGGGGAGAAAAGATGGCAATATACGCGTCCAACGTGGCGAATCTGGTGCTGTTTGTGGCCAAAGTGTACGCTTCGATGGAGAGCAAATCGATGGCGGTCA TTGCTTCCACCGTTGATTCTTTCCTGGACCTCATGTCAGGGTTCATCCTGTGGTTCACTGACCATGCCATGAGAAAGCCGAACCAGTATCGCTATCCGAT TGGCAAACAGAGGATGCAACCCGTGGGGATAGTTGTTTTTGCCTCGGTGATGGCGACTCTAGGGCTTCAGATCATCTTCGAATCTGGGAGGGAACTTATA GCTAAGGCTAAGCCGGAGTCGGATGCAAATAAAGTGGACTGGATGATCGGGATTATGACATCGGTCACGGTTATAAAGTTTGGGCTAACATTGTATTGTC GTGGATTCAAGAACGAAATTGTGAGGGCGTACGCTCAGGACCATTTCTTTGATGTCATCACAAACTCAATCGGTTTGGGAGCGGCTGTTCTAGCTATCAA GTTCTATTGGTGGATCGACCCAGTTGGGGCTATACTCATAGCGCTGTACACAATCTGGAACTGGTCAGGAACAGTGATGGAGAACGTGGGTTCGCTGATA GGGAGAACGGCGCCACCGGAGTACTTGGCGAAGTTGATATTCTTGATATGGAACCATCACCAGGAGATCAAGCATATTGACACTGTGAGAGCTTATACGT TTGGATGTCATTACTTTGTGGAAGCAGACATTGTGCTCCCCGCTGACATGTCTCTTTGCGAGGCACATAACATAGGGGAGACGCTTCAGGAGAAGATTGA GCAGTTTCCTGAAGTAGAACGTGCTTTCGTCCATGTCGATTTCGAGTTCACCCATCAACCAGAGCACAACCCCAAGCGATCATCTTCCAAATAA
AA sequence Show only first row Show all	>Lus10001768 pacid=23159131 polypeptide=Lus10001768 locus=Lus10001768.g ID=Lus10001768.BGIv1.0 annot-version=v1.0 MEADAESSSSELVGIMNKEEEEMRPPPWRLNLDIYEMKLLKGIAALSAAKADYSYQTSSLHWFNAGRASSLARMVGNRTPSPRIDSFDYRVELLSPPPPG ERAAQTSLPSWRLDIDKFQLPSHTTTCTSTTTISTSTPRRQQQRQIPSFLASLRKKERKVAQYYKAQQDLVKEFNEVESFAECGVMPGGQMTDKEIRDVA RGEKMAIYASNVANLVLFVAKVYASMESKSMAVIASTVDSFLDLMSGFILWFTDHAMRKPNQYRYPIGKQRMQPVGIVVFASVMATLGLQIIFESGRELI AKAKPESDANKVDWMIGIMTSVTVIKFGLTLYCRGFKNEIVRAYAQDHFFDVITNSIGLGAAVLAIKFYWWIDPVGAILIALYTIWNWSGTVMENVGSLI GRTAPPEYLAKLIFLIWNHHQEIKHIDTVRAYTFGCHYFVEADIVLPADMSLCEAHNIGETLQEKIEQFPEVERAFVHVDFEFTHQPEHNPKRSSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	0	1
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	1.0	0.9823
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	1.4	0.9765
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	2.2	0.9680
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	2.8	0.9649
					Lus10000100 [exp]	2.8	0.9694
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	4.6	0.9714
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	4.6	0.9661
AT5G03890			unknown protein		Lus10015117 [exp]	5.2	0.9638
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	5.8	0.9506
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017486 [exp]	6.4	0.9495

Compare expression of checked genes

Lus10001768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.