Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010798 [exp] 147 / 3e-42 AT5G27260 61 / 5e-10 unknown protein Lus10032816 [exp] 133 / 1e-39 AT2G24960 57 / 1e-09 unknown protein Lus10004397 [exp] 126 / 2e-35 AT5G27260 77 / 6e-16 unknown protein Lus10022379 [exp] 123 / 2e-34 AT5G27260 74 / 1e-14 unknown protein Lus10024284 [exp] 100 / 4e-27 AT5G27260 50 / 2e-07 unknown protein Lus10028091 [exp] 89 / 1e-21 ND / Lus10024762 [exp] 85 / 2e-21 ND / Lus10026427 [exp] 82 / 9e-20 ND / Lus10022993 [exp] 73 / 8e-16 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001769 pacid=23142789 polypeptide=Lus10001769 locus=Lus10001769.g ID=Lus10001769.BGIv1.0 annot-version=v1.0 ATGTCCACCACTCCTTTGTTCTCAATTGCTTTGTCATCTTGCTATGCTACTTTTATAATTTGGTTTGGGAAGTCCTTCAATCAATCTGCAACACAGTCAC ATTCTAAAGCAAGTGGGCTCACCAACAAGCCACTGCCCTATTGGGACGATTTGTGTTTCATCTTTGGGATTCACCAAGCTGCAGGCGCTGATACAGTTCA ACCCACCGATGATGCAAGCAAACTAATGGCCGATGATGGGGTGTCAGAGAATATGGAGGCGAATTCGGAACGTGGAGACTCCTACACCATCCCTGTAGAT ATGGACCATAATGAAGTTATGGAGGACATCATTAACCAAGGGATTGACCTACACGCAATGGGACTTCAAAAAATCGACGTTGCAATCACCTCCAAAAGGG TGCATCTAAAAAGAAAACAAGCTGCAACATCGTCTGGAAGTAAACGGTCCAGGCTGATGCTGGTTTTGAGATTGTTGCTAGTATGTCATCGACCGGTGAG AACCTATCCAAAATTGTAA
AA sequence Show only first row Show all	>Lus10001769 pacid=23142789 polypeptide=Lus10001769 locus=Lus10001769.g ID=Lus10001769.BGIv1.0 annot-version=v1.0 MSTTPLFSIALSSCYATFIIWFGKSFNQSATQSHSKASGLTNKPLPYWDDLCFIFGIHQAAGADTVQPTDDASKLMADDGVSENMEANSERGDSYTIPVD MDHNEVMEDIINQGIDLHAMGLQKIDVAITSKRVHLKRKQAATSSGSKRSRLMLVLRLLLVCHRPVRTYPKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001769 [exp]	0	1
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	3.6	0.9452
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10002095 [exp]	6.8	0.9147
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	9.2	0.8990
AT5G26670			Pectinacetylesterase family pr...		Lus10000253 [exp]	11.6	0.8727
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10008411 [exp]	12.0	0.9037
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	13.3	0.9109
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	14.0	0.9103
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10028451 [exp]	14.4	0.9110
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10018092 [exp]	15.2	0.8330
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	16.1	0.9057

Compare expression of checked genes

Lus10001769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.