Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43570 49 / 4e-07 CHI "chitinase, putative", chitinase, putative (.1) AT2G43610 47 / 2e-06 Chitinase family protein (.1) AT2G43620 45 / 5e-06 Chitinase family protein (.1) AT3G54420 44 / 1e-05 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 44 / 1e-05 Chitinase family protein (.1) AT2G43590 44 / 2e-05 Chitinase family protein (.1) AT2G43600 42 / 8e-05 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020253 [exp] 213 / 2e-71 AT2G43610 54 / 4e-09 Chitinase family protein (.1) Lus10001772 [exp] 89 / 6e-23 AT2G43610 44 / 5e-06 Chitinase family protein (.1) Lus10020338 [exp] 80 / 2e-19 AT2G43620 57 / 2e-10 Chitinase family protein (.1) Lus10028377 [exp] 52 / 3e-08 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10041830 [exp] 50 / 1e-07 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10041828 [exp] 47 / 2e-07 AT3G12500 59 / 8e-12 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10014253 [exp] 44 / 5e-06 AT2G43570 46 / 1e-06 "chitinase, putative", chitinase, putative (.1) Lus10025948 [exp] 45 / 7e-06 AT2G43610 50 / 3e-07 Chitinase family protein (.1) Lus10006552 [exp] 45 / 8e-06 AT3G04720 244 / 1e-82 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093800 [exp] 47 / 1e-06 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 45 / 5e-06 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093900 [exp] 43 / 5e-05 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 42 / 5e-05 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.004G182000 [exp] 41 / 0.0001 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.013G125100 [exp] 41 / 0.0002 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.009G141700 [exp] 41 / 0.0002 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.013G041700 [exp] 40 / 0.0002 AT3G04720 248 / 4e-84 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041900 [exp] 40 / 0.0002 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.019G094000 [exp] 40 / 0.0003 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00187 [flax] [poplar] Chitin_bind_1 Chitin recognition protein
Representative CDS sequence Show only first row Show all	>Lus10001773 pacid=23174805 polypeptide=Lus10001773 locus=Lus10001773.g ID=Lus10001773.BGIv1.0 annot-version=v1.0 ATGGCAAAATCAGCAACCAATGCTTCTTTCTCGTCCCTAATAGCAATCTTAATTGTGACAGCAATGCTTTTCGCTGTCGCTAATTCTCAAAATTGCGGCG AAGATGGCAACAACGCCCGTTGCTCGGACGACAACTGTTGCAGCCAGAGTAGCTGGTGCGGGGTCTCCGACGCACACTGCGGCCACGGATGTCAGCCCGG CTTCGGCAAGTGTTCGTCGTCCGGTGGTGGCGGCGGCGGCGGCGTCCCCGGGCCAGATCCCGGCGTGTCCTTCTTCGAGTTGGACGGTAAGCACTATTCG CCTACGCCGATAACGAAGAACCTCACGCACGACGACAGTTATTACAGCACTCCGAACTGCGGGAGTCAGGCCGACGATAAAGAGTGCGAAGAGACAAAAT ACTGCTGCAGTCAGTTTGGTTTCTGTGGGGAAACAGATAAGTATTGTGGCAAGAAATGCCAGTCCGGCCCGTGTACGGGCGGTAGCGGCGGACAAGAGCC GAAGACTCCATCGCCGTCTAATTAG
AA sequence Show only first row Show all	>Lus10001773 pacid=23174805 polypeptide=Lus10001773 locus=Lus10001773.g ID=Lus10001773.BGIv1.0 annot-version=v1.0 MAKSATNASFSSLIAILIVTAMLFAVANSQNCGEDGNNARCSDDNCCSQSSWCGVSDAHCGHGCQPGFGKCSSSGGGGGGGVPGPDPGVSFFELDGKHYS PTPITKNLTHDDSYYSTPNCGSQADDKECEETKYCCSQFGFCGETDKYCGKKCQSGPCTGGSGGQEPKTPSPSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43570		CHI	"chitinase, putative", chitina...		Lus10001773 [exp]	0	1
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016459 [exp]	1.0	0.9720
					Lus10031461 [exp]	16.5	0.8381
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	21.3	0.9297
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	26.6	0.9223
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023513 [exp]	29.7	0.9223
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024627 [exp]	34.9	0.9218
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	38.4	0.9213
					Lus10014857 [exp]	41.4	0.9212
					Lus10026755 [exp]	44.3	0.9212
					Lus10022172 [exp]	47.0	0.9212

Compare expression of checked genes

Lus10001773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.