Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56800 192 / 1e-63 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 192 / 1e-63 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 192 / 1e-63 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G43810 191 / 2e-63 CAM7 calmodulin 7 (.1) AT5G37780 190 / 4e-63 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 190 / 4e-63 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G21274 189 / 1e-62 ACAM-6, CAM6 calmodulin 6 (.1) AT3G22930 189 / 2e-62 CML11 calmodulin-like 11 (.1) AT4G14640 188 / 4e-62 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G51920 135 / 2e-41 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009176 [exp] 217 / 2e-73 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10039391 [exp] 197 / 7e-66 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10041288 [exp] 191 / 3e-63 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 191 / 3e-63 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 191 / 3e-63 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 191 / 3e-63 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 163 / 4e-52 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10024830 [exp] 154 / 2e-48 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10021487 [exp] 148 / 2e-46 AT2G41110 255 / 1e-88 calmodulin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G159300 [exp] 193 / 3e-64 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.005G052800 [exp] 192 / 6e-64 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.010G080900 [exp] 192 / 1e-63 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.016G024700 [exp] 191 / 2e-63 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 191 / 2e-63 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 191 / 2e-63 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 191 / 1e-62 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.013G040300 [exp] 188 / 3e-62 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1) Potri.015G032600 [exp] 186 / 2e-61 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 184 / 1e-60 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10001775 pacid=23174799 polypeptide=Lus10001775 locus=Lus10001775.g ID=Lus10001775.BGIv1.0 annot-version=v1.0 ATGGAGGTCTTACAAGGAGAAATATTAGGCAACGATCAGATCCTCGAGTTTCATGAAGCCTTCTGCTTGCTCGACAAAGATGGCGACGGTCGGATATCGA TCCAAGAACTCAAGACGGCCCTCAGGTCGTTAGGACTCCATCCATCGGAGCGAGAGCTGACGGCAATGATCAACCAAGTGGACGTCGACGGGAAAGGGAG CGTCGGGTTTGAGGAGTTTCTGAGTCTCATGGCTAGTAAGGTGAAGGAGAATGAAGCTGATCAAGAACTCAGAGATGCTTTCATAGTCTTTGATAAGGAC CAAGATGGCTTCATTTCTCCCAGTGAGCTAAGACACGTTATGATGAATGTTGGGGAAAGAGTCACAGACGAAGAGCTTGAACAAATGGTCAAAGAAGCAG ATCTTGATGGGGATGGCCTCATTAATTTTGAAGAATTTGTCAAAGTCATGCTTGCTTCATTATGA
AA sequence Show only first row Show all	>Lus10001775 pacid=23174799 polypeptide=Lus10001775 locus=Lus10001775.g ID=Lus10001775.BGIv1.0 annot-version=v1.0 MEVLQGEILGNDQILEFHEAFCLLDKDGDGRISIQELKTALRSLGLHPSERELTAMINQVDVDGKGSVGFEEFLSLMASKVKENEADQELRDAFIVFDKD QDGFISPSELRHVMMNVGERVTDEELEQMVKEADLDGDGLINFEEFVKVMLASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10001775 [exp]	0	1
					Lus10023495 [exp]	1.7	0.9309
AT1G65870			Disease resistance-responsive ...		Lus10030483 [exp]	2.8	0.8653
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031238 [exp]	8.3	0.8475
AT2G31945			unknown protein		Lus10039201 [exp]	13.9	0.8805
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	14.0	0.8534
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006553 [exp]	15.5	0.8253
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004568 [exp]	22.4	0.8338
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	25.5	0.8715
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10038593 [exp]	28.7	0.7732
AT5G42500			Disease resistance-responsive ...		Lus10032939 [exp]	31.2	0.8541

Compare expression of checked genes

Lus10001775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.