Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 484 / 5e-168 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24290 101 / 1e-22 AMT1;5 ammonium transporter 1;5 (.1) AT3G24300 99 / 1e-21 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT1G64780 89 / 2e-18 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 87 / 6e-18 AMT1;4 ammonium transporter 1;4 (.1) AT4G13510 84 / 8e-17 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020248 [exp] 954 / 0 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 652 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 651 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024833 [exp] 647 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 646 / 0 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 596 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 593 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 522 / 0 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 471 / 3e-163 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040401 [exp] 719 / 0 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 657 / 0 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 655 / 0 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 619 / 0 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 530 / 0 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 510 / 3e-178 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 496 / 2e-172 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 477 / 6e-165 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023022 [exp] 475 / 2e-164 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 469 / 7e-162 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10001776 pacid=23174802 polypeptide=Lus10001776 locus=Lus10001776.g ID=Lus10001776.BGIv1.0 annot-version=v1.0 ATGGAAAAATCCTTCCTCCCACCGAACCTGATTCCGGACGAGGCGAATCCAGAATGGCTCAATAAAGGCGACAACTCGTGGCAGCTGGCCGCGGCAGCGT TCGTGGGGCTCCAGTCGATCCCGGGGCTGGTGATCCTGTACGGTAGCTTGGTGAAGAAGAAATGGGCGGTGAACTCGGCCTTCATGGCCCTCTACGCCTT TGCGGCCGTGATGGTGTGTTGGGTCGGGTGGGGGTACAGGATGTCGTTTGGCGAGAAGATGCTGCCGTTTTGGGGGTACCCTGCCGTTTCGTTGGATGCT GAGTTCTTGCTTCAGAAGGCCTTTTTGGGGAACTTCCCCACGGCCACTATGGTGTTCTTCCAGGGAGTGTTTGCATGCATAACGTTGATATTGGTGGCCG GCTGCTTGCTCGGGAGGATGAACTTCACGGCGTGGGTGATCTTCGTCCCTCTTTGGCTGACGTTTTCCTACACCGTCGGAGCCTTCAGCGTTTGGTGTCC CGACGGCTGGCTCGCCAAGTTGGGGATCATCGATTTCTCCGGCGGCTATGTCATTCACGTCTCCGCCGGCGTCGCTGGCATCACGGCGTCGTATTGGGTC GGCCCAAGGTTAGATAAAGACAGGGAAAAGTTCCCGCCGAACAACGTCATCCTGACGCTGGCGGGCGCCGGACTTTTATGGATGGGGTGGAGCGGGTTCA ACGGCGGCGGACCGTTCGCCGCCAGCATAGACGCTTCCCTCGCCATCCTCAACACCCACGTGTGCACATCCGTCAGCTTGCTGATGTGGATCCTGCTCGA CTCCATATTCTTCGGCAAGCCTTCCGTCATTGGCGCCGTCCAAGGGATGATCGCCGGCCTTGTCTGCATCACTCCGGCTGCCGGAGTTGTGCAAGGTTGG GCGGCAATGATAATGGGAGTAATCTCCGGTACGGTTCCGTGGTACACGATGATGGTCCTCCACAAACGCCTCCATTTCTTAACCCACGCCGACGACCCCA TGGCCATCTTCCACACCCACGCCATCGCCGGGAGTCTCGGAGGGATCCTCACCGGAATATTCGCTGTTCCGAAGCTCTGCCGCCTCTTCTTCATGGTCCC CGAATGGGAGAGGTATATTGGTCTGGCTTATGCCTTACAAAACAACCGCTCATCAGCGGGGTTCCGCCAGCTAGGCATCCAACTGGCGGGAATCGGCTTC ATAGTTGTCTTAAACGTTGTGGTCACCACCATAATATGTTGGCTGGTGGGGCTCATTGTCCCGTTGAGGATGCCGGAGGACAAGCTGTACGTAGGAGACT ACGCGGCCCACGGAGAGGAGGCGTTCGCTCTGTGCGCTGACGTGGATGGTGGGACGACAGTAGGGAACTCGAAGCCAGGTTCCCCATACGAGAACTATGC TTCGAGAAGCTACGAGAACTACTCGAAAGATCGAAGCTACGTGTCTAATTCGAAGGGAGGCCACTTGCCGGAAAGAAGGTACGAGCATCCAATGATGTCA CCGGTTAGCGAGGAGCAGTCGCCGTACCACGGGGACGGGCGAAGGTATGTGAACTCGTTGTATGATGTTGACGATTCGTTTGCTCAGTCGAAATCCATCC AAATGGTTTGA
AA sequence Show only first row Show all	>Lus10001776 pacid=23174802 polypeptide=Lus10001776 locus=Lus10001776.g ID=Lus10001776.BGIv1.0 annot-version=v1.0 MEKSFLPPNLIPDEANPEWLNKGDNSWQLAAAAFVGLQSIPGLVILYGSLVKKKWAVNSAFMALYAFAAVMVCWVGWGYRMSFGEKMLPFWGYPAVSLDA EFLLQKAFLGNFPTATMVFFQGVFACITLILVAGCLLGRMNFTAWVIFVPLWLTFSYTVGAFSVWCPDGWLAKLGIIDFSGGYVIHVSAGVAGITASYWV GPRLDKDREKFPPNNVILTLAGAGLLWMGWSGFNGGGPFAASIDASLAILNTHVCTSVSLLMWILLDSIFFGKPSVIGAVQGMIAGLVCITPAAGVVQGW AAMIMGVISGTVPWYTMMVLHKRLHFLTHADDPMAIFHTHAIAGSLGGILTGIFAVPKLCRLFFMVPEWERYIGLAYALQNNRSSAGFRQLGIQLAGIGF IVVLNVVVTTIICWLVGLIVPLRMPEDKLYVGDYAAHGEEAFALCADVDGGTTVGNSKPGSPYENYASRSYENYSKDRSYVSNSKGGHLPERRYEHPMMS PVSEEQSPYHGDGRRYVNSLYDVDDSFAQSKSIQMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10001776 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10016392 [exp]	14.1	0.7688
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Lus10004206 [exp]	19.2	0.7588
AT3G26830		CYP71B15, PAD3	PHYTOALEXIN DEFICIENT 3, Cytoc...		Lus10011384 [exp]	26.8	0.7452
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10008110 [exp]	29.1	0.7588
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10004707 [exp]	29.2	0.7703
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Lus10024515 [exp]	33.9	0.7654
					Lus10001127 [exp]	78.8	0.6907
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	82.9	0.7321
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10026856 [exp]	83.0	0.6990
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	107.1	0.7304

Compare expression of checked genes

Lus10001776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.