Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020251 [exp] 94 / 6e-25 AT3G04720 67 / 7e-14 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001778 [exp] 87 / 2e-22 AT3G04720 58 / 1e-10 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020250 [exp] 87 / 5e-22 AT3G04720 66 / 1e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020252 [exp] 46 / 2e-06 AT3G04720 135 / 4e-40 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003588 [exp] 45 / 2e-06 AT3G04720 128 / 1e-37 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001774 [exp] 41 / 9e-05 AT3G04720 125 / 2e-36 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003264 [exp] 40 / 0.0001 AT3G04720 181 / 1e-58 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003262 [exp] 39 / 0.0003 AT3G04720 154 / 2e-48 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10001779 pacid=23174792 polypeptide=Lus10001779 locus=Lus10001779.g ID=Lus10001779.BGIv1.0 annot-version=v1.0 ATGAGTTCTCGTATCCGATTTACTGCGGCGGCCATTCTTTTTAACCGAATGCTAAGTAAACTAAGTACGATGCGGCGAATCGCGATTGGGTCATTGGAAG CTGACGTCGGATTTCGTTGGCAGAAATACGAGACAGCGGATTGGGGTTCGAAGTACGGTTCGGTTGCTTACCGTCTACCCAAGGACACAATCATCGGGGG CCGGATATTTGCGGCCAGTGCGTCCGAGCCATTGTTCTCAAATCCTGAATTCCCGAATTTTATGCAGATACAGAAGATAGGTATGAATTACACAATGGCT CGAGTCGTCGACCAATGCTCAAACGAAGATGGCACTGAACTAGTGTTGGACTACAAGACCGTGGTCTCGCAGATCGAGAAGACCGAATCGGGGAGAGCTA GTGGTCAGGTTTCAGTGGAGTTCCACTTCGTCAGTTGCTATCAGTGA
AA sequence Show only first row Show all	>Lus10001779 pacid=23174792 polypeptide=Lus10001779 locus=Lus10001779.g ID=Lus10001779.BGIv1.0 annot-version=v1.0 MSSRIRFTAAAILFNRMLSKLSTMRRIAIGSLEADVGFRWQKYETADWGSKYGSVAYRLPKDTIIGGRIFAASASEPLFSNPEFPNFMQIQKIGMNYTMA RVVDQCSNEDGTELVLDYKTVVSQIEKTESGRASGQVSVEFHFVSCYQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001779 [exp]	0	1

Compare expression of checked genes

Lus10001779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.