Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04780 290 / 7e-102 Protein of unknown function (DUF1000) (.1) AT2G25950 61 / 2e-11 Protein of unknown function (DUF1000) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020246 [exp] 319 / 4e-111 AT3G04780 265 / 7e-90 Protein of unknown function (DUF1000) (.1) Lus10007454 [exp] 62 / 1e-11 AT2G25950 341 / 2e-120 Protein of unknown function (DUF1000) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039500 [exp] 294 / 3e-103 AT3G04780 310 / 9e-110 Protein of unknown function (DUF1000) (.1) Potri.005G052100 [exp] 292 / 2e-102 AT3G04780 310 / 1e-109 Protein of unknown function (DUF1000) (.1) Potri.018G056100 [exp] 56 / 1e-09 AT2G25950 366 / 5e-131 Protein of unknown function (DUF1000) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF06201 [flax] [poplar] PITH PITH domain
Representative CDS sequence Show only first row Show all	>Lus10001780 pacid=23174798 polypeptide=Lus10001780 locus=Lus10001780.g ID=Lus10001780.BGIv1.0 annot-version=v1.0 ATGTCGTCTACTGCACCAGCAGCTGCTTCCAGCGCGATTCAACGGAATCAAGTTGATCTAGTTGACTTTGTCGACTGGTCTGGAGTTGAATGCCTTAACT ACAACTCTGGCCATCCAATTGCCAATGCTCTCAAACAGGGTTACAGGGAGGATGATGGGTTGAACTTAGAGAGTGATGCGGATGAGCAGCTGTTGATTTA CATACCTTTCAATCAAGTTGTTAAGCTGCACTCTATTGCTCTCAAGGGGCCTGAAGAAGAGGGTCCGAAGACAGTGAAGCTTTTTTCGAACAAGGAGCAT ATGGGGTTCAGTAATGTGAATGATTACCCTCCTAGTGATACCGTAGTACTGTCAGAAGATGGTGTGCAGGGGAAACCTGTACCGTTGAAGTATGTTAAGT TTCAGAACGTCCGTAGTGTGACAATTTTCATCGAGGACAATCAGGCTGGGGGAGATGTTACTAAAGTTCAGAAGATTGCATTGTTTGGATCAACGGTGGA AACAACAGACATGAAGGGACTGAAGAAAATCGAGGATCACTGA
AA sequence Show only first row Show all	>Lus10001780 pacid=23174798 polypeptide=Lus10001780 locus=Lus10001780.g ID=Lus10001780.BGIv1.0 annot-version=v1.0 MSSTAPAAASSAIQRNQVDLVDFVDWSGVECLNYNSGHPIANALKQGYREDDGLNLESDADEQLLIYIPFNQVVKLHSIALKGPEEEGPKTVKLFSNKEH MGFSNVNDYPPSDTVVLSEDGVQGKPVPLKYVKFQNVRSVTIFIEDNQAGGDVTKVQKIALFGSTVETTDMKGLKKIEDH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04780			Protein of unknown function (D...		Lus10001780 [exp]	0	1
AT4G16710			glycosyltransferase family pro...		Lus10028587 [exp]	1.0	0.8822
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10010433 [exp]	2.0	0.8725
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	3.0	0.8717
AT5G61310			Cytochrome c oxidase subunit V...		Lus10010008 [exp]	6.0	0.8633
AT1G07170			PHF5-like protein (.1.2.3)		Lus10018253 [exp]	7.3	0.8373
AT2G28430			unknown protein		Lus10022580 [exp]	10.8	0.8068
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10039604 [exp]	11.2	0.8285
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	11.4	0.8638
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019447 [exp]	12.0	0.8601
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Lus10009495 [exp]	14.3	0.8127

Compare expression of checked genes

Lus10001780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.