Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32080 375 / 1e-131 PUR ALPHA-1, PURALPHA-1 purin-rich alpha 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001782 [exp] 482 / 1e-173 AT2G32080 425 / 4e-151 purin-rich alpha 1 (.1.2) Lus10009182 [exp] 422 / 9e-150 AT2G32080 442 / 9e-158 purin-rich alpha 1 (.1.2) Lus10020245 [exp] 412 / 2e-147 AT2G32080 327 / 6e-114 purin-rich alpha 1 (.1.2) Lus10015921 [exp] 385 / 7e-136 AT2G32080 363 / 5e-127 purin-rich alpha 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G224000 [exp] 424 / 1e-150 AT2G32080 458 / 2e-164 purin-rich alpha 1 (.1.2) Potri.001G000700 [exp] 413 / 1e-146 AT2G32080 447 / 5e-160 purin-rich alpha 1 (.1.2) Potri.013G061100 [exp] 149 / 8e-43 AT2G32080 162 / 9e-48 purin-rich alpha 1 (.1.2) Potri.019G032001 [exp] 49 / 2e-07 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [flax] [poplar] sPC4_like PF04845 [flax] [poplar] PurA PurA ssDNA and RNA-binding protein
Representative CDS sequence Show only first row Show all	>Lus10001781 pacid=23174803 polypeptide=Lus10001781 locus=Lus10001781.g ID=Lus10001781.BGIv1.0 annot-version=v1.0 ATGGAGGGGAATGCGGGTGGTGGCGGAGGGGCGGTGGCAGCTTCGAATGCAGCTGTGCCGGCGGGGGGAGGCAATTCTGTAGGTGGAGGAGGGAAGGATG TTGAACTGATGTGCAAGACACTCCAAGTTGAGCACAAGCTGTTCTACTTTGATTTGAAGGATAACCTTCGAGGCCGGTACTTGAAGATCTCTGAGAAGAC TTCGTCCACCAGGTCTACGATCATCGTCCCTTCCTCCGGGATTTCCTGGTTCTTGGACGTCTTCAATTACTTTGTCACTTCTGATGAGCAGGATTTGTTC AGCAAGGAGTTACCGTTGGACACCAAGATCTCAGAAGCTTCTGTTAGCAGAAACCGCAGTACGATCATTGTTCCTGCTGGAAGTTCCAGGGATGAAGGTT GGGCTTCATTTAGAAACATTTTGGAAGAGATCAACGAAGCATCAAGGCTTTTCCTGCCTCCAGGCACTCAGCAAAGTTCTGAATCATTGGAGCGTCTAGT TGGACTCTCTGATGATGTTGGCGCTGGCTTCATACCAGGACATAGCAGTCAAACTGCTCCAACTCAAGAACTAAACGTGGATCGCTCAGTTTATTTACCA ACTCCGGATGAGATTGGTAACCTAGGGGTGTCAAAGGTTATCCGAGTCGATCAAAAGAGATTCTTCTTCGATCTCGGGAGTAACAATCGTGGCCATTTCT TGAGGATCTCTGAGCTTGCTGGTGCTGATAGATCCTCCATAATTCTTCCACTTTCCGGACTTAAACAGTTCCATGAAATTGTCGGCCACTTCGTCGACAT CACCAAAGATCGAGTCGAAGCGATTGGGGGCAGCGCAAACGTCCGAACTGTTGAAACCCCTCAAAGATGA
AA sequence Show only first row Show all	>Lus10001781 pacid=23174803 polypeptide=Lus10001781 locus=Lus10001781.g ID=Lus10001781.BGIv1.0 annot-version=v1.0 MEGNAGGGGGAVAASNAAVPAGGGNSVGGGGKDVELMCKTLQVEHKLFYFDLKDNLRGRYLKISEKTSSTRSTIIVPSSGISWFLDVFNYFVTSDEQDLF SKELPLDTKISEASVSRNRSTIIVPAGSSRDEGWASFRNILEEINEASRLFLPPGTQQSSESLERLVGLSDDVGAGFIPGHSSQTAPTQELNVDRSVYLP TPDEIGNLGVSKVIRVDQKRFFFDLGSNNRGHFLRISELAGADRSSIILPLSGLKQFHEIVGHFVDITKDRVEAIGGSANVRTVETPQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001781 [exp]	0	1
AT5G53045			unknown protein		Lus10017942 [exp]	3.3	0.8948
AT1G19130			unknown protein		Lus10027661 [exp]	4.8	0.9268
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	9.5	0.9019
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	10.3	0.9078
AT3G52220			unknown protein		Lus10039101 [exp]	10.7	0.9066
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10022626 [exp]	13.4	0.8932
AT3G11810			unknown protein		Lus10037134 [exp]	13.6	0.8981
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10042104 [exp]	18.0	0.8912
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	19.2	0.9063
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	20.6	0.8979

Compare expression of checked genes

Lus10001781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.